Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2264 ATGGCTTCCATTAATAATAATCCGTCATCATGTGATGCCTCTGCCAAAGAACGCCTTCGTTGGACTCAACAACTCCATGATATGTTTGTTGAAGCTGTCAATAGGCTTGGTGGCCCAGATAGGGCAACGCCAAAAAGTATTGTGAAGGAAATGAAGGCAATGGGTGAATCTGGAATAACCATTTATCATGTCAAAAGCCACTTGCAGAAATATAGGATCTCCAAGTTGATTCCAGAATCCACTACTAAAGGAGGAAAGCCTGAGAGGAGAAGCATATCAGATATATTGCCTAATTTCAGCACATTAACTGCTCTTCAGCTAAATGAAGCTCTACAAATGCAAATGGAATCACAAAAACGATTGAACGATCAACTAgagGTTCAGAAAAGCTTGAAGCTAAAAATGGAAGCACAAGGAAGATACTTGGAGAGAATGGgagaaaacttggaaaagagagGAATAGTAATCCCAACAAGACATTATTATGGGAAGAATTATTCAACAAAGGCTTTAATAATGGGAATTGGTGCATCATCACTGCCTTGTCTTTCATCAGAAGAGTCATTAtctgataatattaataataataattatgtgaCAAAGAATAATAAAAGGCAAAGATCATCATCAGTAGTAATGAAGGAGGGTATTAGTGTAAATTTTCCATCAAGTATGGATAACCTTATTActgcttcatcatcatcatcagtacCTTCTGAATATTTCTGCAACAACCAACAAAGCAATAACTGGGATCTTATTTCTTGGAATCAGCTTGCTGCAGCTTCATGTTCATCACCTATGCTCCCTACTTTTTTATTCTGA 825 0.3418 MASINNNPSSCDASAKERLRWTQQLHDMFVEAVNRLGGPDRATPKSIVKEMKAMGESGITIYHVKSHLQKYRISKLIPESTTKGGKPERRSISDILPNFSTLTALQLNEALQMQMESQKRLNDQLEVQKSLKLKMEAQGRYLERMGENLEKRGIVIPTRHYYGKNYSTKALIMGIGASSLPCLSSEESLSDNINNNNYVTKNNKRQRSSSVVMKEGISVNFPSSMDNLITASSSSSVPSEYFCNNQQSNNWDLISWNQLAAASCSSPMLPTFLF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2264 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 76 IPR017930 -
Sto1g2264 274 Pfam MYB-CC type transfactor, LHEQLE motif 106 148 IPR025756 -
Sto1g2264 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 12 214 - -
Sto1g2264 274 Coils Coil 108 128 - -
Sto1g2264 274 SUPERFAMILY Homeodomain-like 15 73 IPR009057 -
Sto1g2264 274 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 74 IPR006447 GO:0003677
Sto1g2264 274 Gene3D - 15 76 - -
Sto1g2264 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 12 214 IPR044848 GO:0003700
Sto1g2264 274 Pfam Myb-like DNA-binding domain 19 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2264 Sto-Chr1 30648790 30653130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2264 7 151 G2-like Transcription Factor Family AT3G04450 43.537 3.24e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto1g2264 Myb_DNA-binding 7.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2264 - - pvu:PHAVU_008G103100g 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2264 1 30648790 30653130 Sto1g2264 1 30648790 30653130 ECH