Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2239 ATGGAAGGGCTTCTGCTGCCCTCTGTGGATAGTATTTTGAAGTTTACACTATTATATTCAATTCGGCGCAATATCAGTTACTTGATTAAATATAGATCCTATCTCGAGGAACTTGAGCTACGAGTTCGGAATCTAGAGGTATTAAGTCACAATTTGGAACGCCAGGTCAGAAACGAGGCGGAAATTCCTGCTGAAGTTCAGTTGTGGCTGAAAGACGTTGCTGATCTCCTTctagagaaagaaaaattgctCGAGCTATACAGCGGAAGGCCATTGCGTCGTTACAAGTTTAGTAAGGAAGCACGAAAGATGATAAGGAAAATTCTTATTTTAGCAAGGGGAGTACATTTTGACAGAATCTCTGACCTGCCCGCATCGGTCGACCCAAATATGTTGGTCCAGTTTGAGTCAAGAATGAGGACTAGCCGTCACATTATTCGGTTACTGGAAGATAACAGTATCGGTATTGTCATAGTGCATGGAATGAGTGGTGTGGGAAAAACCACGCTTGCTAAAGAAGTTGGAAGATACGCTGTTGAGTTGGGATTATTTGATGTGGTAGTCTGTTCAGTAGTATCTCAAGTACCAAATGTGAACAGAATACAAGATGAAATTGCAGATGCCTTGGGCTTGAGACTTGGTTACCAGGAAGGTCAATTAGGGAGGACATTCGAATTTTATCAAATGCTAAGGTGTAGTGATGACTCCGATGAGAGGGATGTCCAGGTCCTAATTATTTTAGATGATGTCTGGTCACACCTTGATATTTATGAAATAGGAATTCCACTGTCAAATTATGGCGTGCGATGCAAGGTACTTCTCACTTCAAGGAACGCAACACCAGTTGATCTTCCAATGGCTATCGTCCCCGTGACAACCTTATCAAACGAAGAAGCTTTCCTTTTGTTTAATCAGATTGTTGGGAAAACTGTATACAGCGAATATTCTGATTTAGCTTGGGAGATAGTTAAGACTTGCGAGGGTCTGCCTCTAGCAATTGAGGCAGTTGCACAGGAATTACGGGGTCAACCATTATCTGACTGGAACCTTGCTTTGCAGCTATTAAGGAGGTCCATTACTGAATTCAACAGTGGTATACTTTCCAGCGTAAAGTTGAGTTATGATTATTTGAGTGACAAAGATAAGTTTATGTTCTTGCTCTGTAGCATTTTTGGGGAACAGATTTACCATGACGACCTTCTCAAATATTGCTGGGGTTTGGGATTATTTGAAGGCGCCGATTCAGTGGGAGAAGCAAGGTCAAGGGTATATAACCTGATGTCTTTGCTTAAAGAAAGATATTTGTTACTGGAAGGAAGAACTAGCGAGTATGGGAAGATGCATAAGATATATCGTGACTTCGCCATAGGGGTTGTATCCAGTGATCCTGATTGGTTCATTGTCAGAGAAGATGGTTGGCCAATAGAATGGCCAGAGGATGAGAATAAGATGGCAAAGCTTACCTACGTTTCTCTGCTGTTCTGCAATGATATGCATCAACTTCCTCATGAGATCATTCCAGAATCCTTGCCCTGGCATAATTTGCAGAGATATAATATTATGATAGGCGAAGATTTTCAGTGTTCCAGCGAGCATGAAGCCTTTAAAGTATTGAAATTGAATCACAATAAAGGCAACATTGCAGGTTCAAAGGATTGGATTGAATCACTGTTGGGGAGTTGTGAACAGTTATGGTTAAAGGAATTCAAGGGTTCGAAGAATGTTCTTTTGGAGTCAAATGGGGATCAATTTAGATGGTTAAAGCATATCCATATCCAAGATAATGCCGAACTTGAATACTTGCCCCCAGAACTTTTTATCGAATGCTGTCCTTTGTTGAAAAGCGTCTTCAACATATCTGCACACGAATGCCTATTCCAACTCAGAGAAATGGAGATAAGTGGATGTACCAACATGGTAGCTGTAGCTAATAACGATCGAGATGATGTGAAACTCGTTGATGGACATCCCTTCTTTGAAGGAGTgccttgggattttgggttcCCTCATTTGCATGATTTGACACTGAAGGATCTAGATAATCTCAATGGATTCTTTACAAAAGTTGCGAGCAGCAGAGAAATCATTTTGGCAGAGGCGAATATCTATTCTGGTTCACTCTTTCTAAACTTGGTTGTTGCTCTCCCTCTCATGAAGCATTTGAAGTTGATCAATATACCTAATATAAGACATTTGATTGCATCAACTATAACTGACCGCCGGGACCAGGTGGTACCTCTACAAAATTTGGAAACAATGGAAATCATTGGGTGCAATGATCTTTGCAATTTATTCGTCGTTGAAGGTAGTAATATTGATGAAAACTATGGTGGACTATTACCTGAGTTACGTCAACTTTGCTTGCGTAACCTAGGTAGCTTTAGGGGCATAATAGGCGACAATCATCCTTGGagaatattgaatttcaaaacattGAATCAGCTAACAGTGTGCAATTGTAACCAACTGAAGTATATTCTTTCTCTTCATGTCCCCAATAATCTGAAACTCCAAAATATTGATGTAAGTGACTGTGCTATGCTGGAACAAGTTTTTGTATATGGAGATACAGAAATGGCCAAGTCAAACAGCATGGTGTTACCCCTTTTGCAGTCTCTTAAGCTGAGCAATTTGCCTAAGCTAGCGAGTATTTGTTTTGGAAGTCGTCATCTTATCTCTGTGCAACTGTATAAATGTAACAGTTTGAAATATGTGTTTCCATTATCAGTAGCTCGACGGCTTTCTTCCCTCCAAGAGCTTAAGATAATTTCGTGTGCAAGGATTGGAGAAATTGTAACAAGAGAAACGGGATCAGCAGCTGCAGATACTGTTGAGTTCCCTCGGCTGGACACTCTAATACTTGAGAAGCTGCCAAAATTTACTAGATTCTGCCACAGTGGTTGTACCGTTAAATGGCACTCGTTGGAAATGGTAAGAGTGGTTGAGTGTCCCAAGATTGAGAAGTCCACTTTGGGAAAGGTAGACAGACCTCTGTTGAAGTCGGTGGAGGTGATTGACTGCAACCCTTGGGAGAATCCACATAATTTGAGCAACATTAACTACCTCTTCGACTTAACTGATGAACTCGCGGATCTTACAGGGTTAACAATTGAAGACTCAGAGCACTTGAAAAGATATATGAAAATGGAGATTCGGGATTCATCTTTCGCGGAACTGAAGGTGCTAGAGGCCAGACAGTGTGATACAGAGTTGACTAAATTTTTGTCCATATTGCTTCACAGGTCACATAAGCTAGAGAAACTGACAGTAGAAAACTGCAAACTGCTGGAACAATTGTTCGACCTTGGAGGCATTGATAAAGGAGAAAATAGGAAATTCCCTAATTTAAACACAATGAGATTATGTGATTTACCAAAGTTGAATTGCATATGGAACGAAGATGCAAGTGGAATCTTCCACCTTGGTAAACTAGTCAAATTAGAAATCATCAATTGTGGCTTACTAAAGAATCTAGTTTCGACTGGTTTTGTGGAAAATCTTGTGCAACTGGAGGAATTAAGTATAGATTCGTGTGAGATGATAGAAGAAGTGGTAACTTTCAAGGTAGGAGAAGAGAAGATGGAAGAGCAACAAGTAAGATCGTTTCCTAACTTAAAGAATGTTGAACTTGTAAGCCTCCCAAATTTCTTAAAGTTCAAATCAGGGAACTACCATTTTAGATTTCCGAATCTGCTGAGTTTGAGTATAGATCATTGTCCCAACATGGAGGCATTTACAACCGGATTTTTAAGCGCGCAGGCACCATCTTTTAATTCTGGGACATCTGAACATACTCGGGATGATATAATGGATGTATACCCGAAATTGCAGATACTGAAGCTGGTAGGCCTCGACACATTTGAGGAGATATGGCAGCAGGGGCTCTTTTCCACTAAATCATTCTGTGAGTTGAAAGAGCTAGAAGCGCACACCTTAGGTAATCTGAAATATATTTTCCCTTCAAGTATGCTGCCAAGGTTGGAGAAGCTGGAGACACTGGTTGTGAATGAGTGCAGTTCACTGAATAATGTGTTTCAATTAACTCACAATATGGTTATCGAGCTACCCATGCTAAGGAATCTGATACTTAGTCGCCTACCCTCACTGAAGCACGTAGTTGACAAGAATTCAATCATGGTCCTTCAAAACCTGGAgattataaaagtaaaatgcTGTGATTTTCTTAGGCACTTGTTATTACCCTATTCTAGCTGTCTCAAACTGAAAGAGATAGAGATTTCTGAGTGTAAGGTTTTAGAAGAAATTTTCATTGACACACAAGAAGAAATAAGGGATGGAAAAGCTATTCGTCATCTGGAATCTCTCATTCTTGAAAATCTACCAAAGCTCTCACACCTTCCCCTGGagaattttgaatttccatCACTGGTAGAAGTCAGAATAGTAGACTGTCCTTTGCTCAATACATATAAACCAGGAAACACAGAAGATGTTTGTTGTACAGCAGACTTCTTCACGAATAAGGATTCGTTTGATAAACTGAAGAAACTGCATCTTATTAATGTGGGTGGTTGTCAGAATATATGGAACAGCGATCTGTCTTCAAGTTCACCAAGTAGATTGAAGAACACAAATGTGGGCGAAAGCAGCACAGTGTCGAACAAATGGTGGAAGCTTAAGAAAACTACTGAGCAGAGGTCTGATGGCGTCGATGGAAAGGAATTACTGCCTGTGTTAGATGAACTGGTGTTGAGTGATCTACCCAGCATGCAACTGTGGAAACAGGAACCTGAAATTCAAGTACTTCGAAATTTGACGTCTATTGAAATCATCCGTTGCAAAAGCATCCAAAAATTATTCTCCATTTCAGTGGCTGAAAACCTTGACGCTCTGGAATTGCTAAAATTGTATGAATGTGAAAGTTTGCAACAAGTTGTTCAAGGTGGAGAAAAAGGCGAGAAACAAATGTTCCGGAATTTGAAGTGCCTTATACTCAAACATCTGCCAAGTCTCACAAGTTTTTGTAAGCAAAAATTTGATTGTGAATTCACTCAGTTAAAGATGGTTAGGGTGGAGAACATCCCAAATATGACGACGTTCATTGAGGGGTCTCTGACGACGCCTAAGTTGAAGGAGGTTTATGTTACACATGTTACCAAATGCTGGCGAGGGGACCTCAACGCAACCATAAATTACTTGCACCAAAATCAAGTTTTTGGATATTAA 5187 0.3966 MEGLLLPSVDSILKFTLLYSIRRNISYLIKYRSYLEELELRVRNLEVLSHNLERQVRNEAEIPAEVQLWLKDVADLLLEKEKLLELYSGRPLRRYKFSKEARKMIRKILILARGVHFDRISDLPASVDPNMLVQFESRMRTSRHIIRLLEDNSIGIVIVHGMSGVGKTTLAKEVGRYAVELGLFDVVVCSVVSQVPNVNRIQDEIADALGLRLGYQEGQLGRTFEFYQMLRCSDDSDERDVQVLIILDDVWSHLDIYEIGIPLSNYGVRCKVLLTSRNATPVDLPMAIVPVTTLSNEEAFLLFNQIVGKTVYSEYSDLAWEIVKTCEGLPLAIEAVAQELRGQPLSDWNLALQLLRRSITEFNSGILSSVKLSYDYLSDKDKFMFLLCSIFGEQIYHDDLLKYCWGLGLFEGADSVGEARSRVYNLMSLLKERYLLLEGRTSEYGKMHKIYRDFAIGVVSSDPDWFIVREDGWPIEWPEDENKMAKLTYVSLLFCNDMHQLPHEIIPESLPWHNLQRYNIMIGEDFQCSSEHEAFKVLKLNHNKGNIAGSKDWIESLLGSCEQLWLKEFKGSKNVLLESNGDQFRWLKHIHIQDNAELEYLPPELFIECCPLLKSVFNISAHECLFQLREMEISGCTNMVAVANNDRDDVKLVDGHPFFEGVPWDFGFPHLHDLTLKDLDNLNGFFTKVASSREIILAEANIYSGSLFLNLVVALPLMKHLKLINIPNIRHLIASTITDRRDQVVPLQNLETMEIIGCNDLCNLFVVEGSNIDENYGGLLPELRQLCLRNLGSFRGIIGDNHPWRILNFKTLNQLTVCNCNQLKYILSLHVPNNLKLQNIDVSDCAMLEQVFVYGDTEMAKSNSMVLPLLQSLKLSNLPKLASICFGSRHLISVQLYKCNSLKYVFPLSVARRLSSLQELKIISCARIGEIVTRETGSAAADTVEFPRLDTLILEKLPKFTRFCHSGCTVKWHSLEMVRVVECPKIEKSTLGKVDRPLLKSVEVIDCNPWENPHNLSNINYLFDLTDELADLTGLTIEDSEHLKRYMKMEIRDSSFAELKVLEARQCDTELTKFLSILLHRSHKLEKLTVENCKLLEQLFDLGGIDKGENRKFPNLNTMRLCDLPKLNCIWNEDASGIFHLGKLVKLEIINCGLLKNLVSTGFVENLVQLEELSIDSCEMIEEVVTFKVGEEKMEEQQVRSFPNLKNVELVSLPNFLKFKSGNYHFRFPNLLSLSIDHCPNMEAFTTGFLSAQAPSFNSGTSEHTRDDIMDVYPKLQILKLVGLDTFEEIWQQGLFSTKSFCELKELEAHTLGNLKYIFPSSMLPRLEKLETLVVNECSSLNNVFQLTHNMVIELPMLRNLILSRLPSLKHVVDKNSIMVLQNLEIIKVKCCDFLRHLLLPYSSCLKLKEIEISECKVLEEIFIDTQEEIRDGKAIRHLESLILENLPKLSHLPLENFEFPSLVEVRIVDCPLLNTYKPGNTEDVCCTADFFTNKDSFDKLKKLHLINVGGCQNIWNSDLSSSSPSRLKNTNVGESSTVSNKWWKLKKTTEQRSDGVDGKELLPVLDELVLSDLPSMQLWKQEPEIQVLRNLTSIEIIRCKSIQKLFSISVAENLDALELLKLYECESLQQVVQGGEKGEKQMFRNLKCLILKHLPSLTSFCKQKFDCEFTQLKMVRVENIPNMTTFIEGSLTTPKLKEVYVTHVTKCWRGDLNATINYLHQNQVFGY 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2239 1728 CDD AAA 145 288 - -
Sto1g2239 1728 SUPERFAMILY RNI-like 864 1100 - -
Sto1g2239 1728 SMART AAA_5 153 304 IPR003593 -
Sto1g2239 1728 SUPERFAMILY RNI-like 507 855 - -
Sto1g2239 1728 PRINTS Disease resistance protein signature 156 171 - -
Sto1g2239 1728 PRINTS Disease resistance protein signature 237 251 - -
Sto1g2239 1728 PRINTS Disease resistance protein signature 326 340 - -
Sto1g2239 1728 PRINTS Disease resistance protein signature 745 761 - -
Sto1g2239 1728 Pfam NB-ARC domain 146 361 IPR002182 GO:0043531
Sto1g2239 1728 Gene3D - 293 378 IPR042197 -
Sto1g2239 1728 Gene3D Ribonuclease Inhibitor 1490 1707 IPR032675 -
Sto1g2239 1728 Gene3D Ribonuclease Inhibitor 475 651 IPR032675 -
Sto1g2239 1728 Gene3D Ribonuclease Inhibitor 1136 1266 IPR032675 -
Sto1g2239 1728 Gene3D Ribonuclease Inhibitor 1299 1486 IPR032675 -
Sto1g2239 1728 Gene3D Ribonuclease Inhibitor 827 1002 IPR032675 -
Sto1g2239 1728 PANTHER RPP4C3 25 502 - -
Sto1g2239 1728 PANTHER RPP4C3 781 862 - -
Sto1g2239 1728 PANTHER RPP4C3 1376 1477 - -
Sto1g2239 1728 PANTHER RPP4C3 553 765 - -
Sto1g2239 1728 PANTHER RPP4C3 1589 1716 - -
Sto1g2239 1728 PANTHER RPP4C3 1141 1282 - -
Sto1g2239 1728 PANTHER RPP4C3 880 1013 - -
Sto1g2239 1728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 388 IPR027417 -
Sto1g2239 1728 Gene3D - 122 283 IPR027417 -
Sto1g2239 1728 SUPERFAMILY L domain-like 1301 1706 - -
Sto1g2239 1728 Coils Coil 35 55 - -
Sto1g2239 1728 PANTHER - 1589 1716 - -
Sto1g2239 1728 PANTHER - 1141 1282 - -
Sto1g2239 1728 PANTHER - 880 1013 - -
Sto1g2239 1728 PANTHER - 781 862 - -
Sto1g2239 1728 PANTHER - 1376 1477 - -
Sto1g2239 1728 PANTHER - 553 765 - -
Sto1g2239 1728 PANTHER - 25 502 - -
Sto1g2239 1728 SUPERFAMILY RNI-like 1113 1248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2239 Sto-Chr1 30410644 30418587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2239 154 443 WRKY Transcription Factor Family AT5G45050 24.918 1.04e-08 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2239 - - dzi:111286870 427.943