LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto1g2210	ATGGACATGGATGTCGACGAAGCTTCTAAACCCAAAGAGGAAAAGCTCTTATTGGTCATATTAGTGGGAGCACCAGGTAGTGGCAAGTCCACCTTCTGTGAAGAAGTTATGCGCTCCTCTACTCGTCCTTGGGTTCGCATTTGCCAGgACACCATTGGAAATGGTAAAGCAGGAAATAAATCTCAGTGTCTAAGTAGTGCAGCTGGAGCATTGAAGGATGGAAAGAGTGTATTCATTGACAGGTGCAATCTTGATAGAGAACAGCGCTCTGGATTTGTAGAGCTTGGTGGAGCCCAAGTAGATGTGCATGCAGTTGTGCTTGATCTGCCTGCTAAACTTTGCATTTCTCGATCTGTCAAACGGACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTAGTGAATAGAATGCTTCAAAAGAAAGAGTTGCCTAAGTTAAGTGAAGGGTTTAGCCGTATAACATTTTGTCAGACTGAGAGTGATGTCAAAGAGGCTGTTAAAACATACAGTGCACTTGGGCCACTGGATAACCTTCCACATGGGTGCTTTGGTCAGAAGAGTTCAGATGCCAAAGTTCAAGTAGGTATAATGAGGTTCCTAAAAAAGGCTGAGGTCCCAGTTGATGCTGAGTctagagagaataaaaatagaaatattactTCTTCCCAAACTGTCGAGATAAAGGATCCCTGCCATAAAGATATGGAAAGTTTTTCATCAAATTTAGATAAAGCCAACACAGTGTCAAAGAACGTAGAAAATCCAGCAGTTGGCTGCCCTGGTACCCATGTCGATCAAATTTCTAAGGATGATGCTCCCACACTAGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCATGAGAAGGCAGCTGATGTTATTGTGGAGAAAGTTGCAGAGTTCTCAAATAAGCTTGGGAATGCTAGACTTGTTTTCGTTGACTTGACTCATGGGTCAAAGATTCTGTCTTTAGTTAAATCCAAAGCTGCACAAAAAAACATAGACTCCAGAAAGTTTTTTACCCATGTTGGGGACATTACTCAGCTTTATTCCACAGGAGGTTTGCGCTGTACCGTGATAGCTAATGCTGCCAACTGGCGTTTGAAACCTGGAGGCGGAGGAGTTAATGCCGCAATTTTCAATGCTGCAGGTCCTGCCATGGAGTCTGCAACCAAAGAACGAGCACAATCTCTTTTACCTGGGAATGCTGTTATTGTCCCTTTAACTTCATCTTCTCCTTTGTTTACTAGAGAGGGAGTAACCCATGTAATACATGTTCTTGGACCAAATATGAACCCACAAAGGCCAAATTGTCTCAATAATGATTACAACAAAGGTTGCAAGATTCTCAAAGAGGCTTACACGTCACTATTTGAAGCTTTTGCATCAATTGTGAGGACTGGGGCAGAGCAAAAGAACAAGAGAGATGTTGATCATGGATCTGAGAAAAGCAAGAAATACAAGGGAGCTGAGGATAACAGTGAATTGAACATCATTGATTCCAGGGTTGAAATGGTAGATTCAAGTAGTAAAAAGACTGATGGAAGCATGAATAGGACATGGGGATCATGGGCTCAAGCCCTTCATCAGATGGCTATGCATCCTGAAAAGCATAAAAATGATTTGCTTGAAATATCCGAAGATGTTGTTGTTCTGAATGATCTGTATCCTAAGGCACAGAAACATGTTCTGGTGCTGGCACGAACTGGAGGCCTTGATTGCCTGGCAGATGTTCGAAATGACCACCTTGACTTAATAAAAAAGATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGCATGAAAATGCTTCTTTGGTCTTTCGTCTTGGATATCATTCGGCTCCATCAATGCGGCAACTACATTTACATGTTATAAGCCAGGACTTTGAATCAAAACATTTGAAGAACAAGAAGCACTGGAACTCATTCAATACCGCTTTCTTTCTTGACTCGGTCAATGTAATTCAAGAGGTCTCTAAAAATGGGAAGGCAACCTTGAAAGATGATGACAAGTTGCTGTCCATGGAGTTGAGATGCCATAGATGTAGAAGTGCACATCCTAACATTCCCAGGTTAAAATCTCATATAAGTAGTTGCTCATCTCCCTTTCCAGCTTATCTACTTCAAAATGGTCGTTTGGTTCATGCACAAGGTGAAGCTAGCACTAGTTCTTAG	2196	0.4162	MDMDVDEASKPKEEKLLLVILVGAPGSGKSTFCEEVMRSSTRPWVRICQDTIGNGKAGNKSQCLSSAAGALKDGKSVFIDRCNLDREQRSGFVELGGAQVDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITFCQTESDVKEAVKTYSALGPLDNLPHGCFGQKSSDAKVQVGIMRFLKKAEVPVDAESRENKNRNITSSQTVEIKDPCHKDMESFSSNLDKANTVSKNVENPAVGCPGTHVDQISKDDAPTLAFPSISTSDFQFNHEKAADVIVEKVAEFSNKLGNARLVFVDLTHGSKILSLVKSKAAQKNIDSRKFFTHVGDITQLYSTGGLRCTVIANAANWRLKPGGGGVNAAIFNAAGPAMESATKERAQSLLPGNAVIVPLTSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYNKGCKILKEAYTSLFEAFASIVRTGAEQKNKRDVDHGSEKSKKYKGAEDNSELNIIDSRVEMVDSSSKKTDGSMNRTWGSWAQALHQMAMHPEKHKNDLLEISEDVVVLNDLYPKAQKHVLVLARTGGLDCLADVRNDHLDLIKKMHAVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFLDSVNVIQEVSKNGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCSSPFPAYLLQNGRLVHAQGEASTSS	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto1g2210	731	Pfam	AAA domain	18	143	-	-
	Sto1g2210	731	PANTHER	APRATAXIN	17	725	IPR026963	GO:0003677\|GO:0006281\|GO:0033699
	Sto1g2210	731	Gene3D	Leucine Aminopeptidase, subunit E, domain 1	337	482	IPR043472	-
	Sto1g2210	731	Gene3D	-	3	174	IPR027417	-
	Sto1g2210	731	Pfam	Macro domain	366	442	IPR002589	-
	Sto1g2210	731	PANTHER	APRATAXIN-RELATED	17	725	-	-
	Sto1g2210	731	Pfam	C2HE / C2H2 / C2HC zinc-binding finger	651	705	IPR032566	-
	Sto1g2210	731	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	18	161	IPR027417	-
	Sto1g2210	731	SUPERFAMILY	Macro domain-like	325	464	IPR043472	-
	Sto1g2210	731	MobiDBLite	consensus disorder prediction	474	496	-	-
	Sto1g2210	731	ProSiteProfiles	Macro domain profile.	331	526	IPR002589	-
	Sto1g2210	731	ProSitePatterns	HIT domain signature.	615	633	IPR019808	-
	Sto1g2210	731	SMART	YBR022w_8	343	478	IPR002589	-
	Sto1g2210	731	Gene3D	-	528	709	IPR036265	-
	Sto1g2210	731	SUPERFAMILY	HIT-like	527	690	IPR036265	-
	Sto1g2210	731	Gene3D	Leucine Aminopeptidase, subunit E, domain 1	261	336	IPR043472	-
	Sto1g2210	731	Pfam	Scavenger mRNA decapping enzyme C-term binding	539	646	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto1g2210	7	721	C2H2 Transcription Factor Family	AT5G01310	60.193	0.0	875

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto1g2210	K10863		-	gmx:100786762	1144.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto1g2210	1	30162079	30166052	Sto1g2210	1	30162079	30166052	ECH