Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2198 ATGGAGTGCATTCCCCCGCCGACCTCATCCGAAGCTTCATCTTCCAGGGCCAAGAAAAAGAGCGCGAAGAAGAGCAAGGGATCAGGAGTCAAACTCTCTACTGATCCTCAAAGCGTGGCGGCCAGAGAACGAAGGCACCGAATCAGCGATCGGTTCAAGATTTTGCAGAGCATGGTTCCTGGAGGGAGTAAGATGGACACAGTGTCGATGCTAGAGGAAGCGATTCACTACGTGAAGTTTCTGAAAACCCAGATTTGGCTTCACCAAACCatgattaataataatgataataactcCGTGGATTTTGATGATCATCGAATTACATTTCCCAATTACGAACACCTCCTCCCTCCGATTCCACAAAACCCTTCCTCTTCGGTGGAGAATTTGACGACGGATATGCCGCTAGACCAATACTGCGGCTTCCATGATCGTGAAGTTGCGACGTCGTTTGACGATCTCAAATTGCAGGGTTTGTGCTTCATCCGGCATCATTCCTTCCCATGTTGTGAAGGATTTTGCAGGGTCTTCAAAGCACAAGAAGCTGAAAAGTTGTCAGGTATCTGTCCTGTGAGGTTGTTTTTCCGCAAAGTTAATACTCCAAGGGTCTCACTCATTGTCATTAAACAAGGGGGAATTGTACCAGAAAAGTTATTATGGGAAAGATCAAGCACTTCAAGATTTGAAGCATTGCAAAAGGATTCAGGGATGACACCATGA 720 0.4528 MECIPPPTSSEASSSRAKKKSAKKSKGSGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINNNDNNSVDFDDHRITFPNYEHLLPPIPQNPSSSVENLTTDMPLDQYCGFHDREVATSFDDLKLQGLCFIRHHSFPCCEGFCRVFKAQEAEKLSGICPVRLFFRKVNTPRVSLIVIKQGGIVPEKLLWERSSTSRFEALQKDSGMTP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2198 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 109 IPR045843 GO:0003700|GO:0006355
Sto1g2198 239 SMART finulus 38 87 IPR011598 GO:0046983
Sto1g2198 239 Pfam Helix-loop-helix DNA-binding domain 42 81 IPR011598 GO:0046983
Sto1g2198 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 90 IPR036638 GO:0046983
Sto1g2198 239 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 10 109 - -
Sto1g2198 239 CDD bHLH_AtIND_like 33 92 - -
Sto1g2198 239 MobiDBLite consensus disorder prediction 1 44 - -
Sto1g2198 239 Gene3D - 37 90 IPR036638 GO:0046983
Sto1g2198 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 81 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2198 Sto-Chr1 30085904 30090164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2198 23 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.098 5.34e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto1g2198 HLH 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2198 - - adu:107475363 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2198 1 30085904 30090164 Sto1g2198 1 30085904 30090164 ECH