Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2182 ATGGCCACAAATTCAATCTCTCCGCCGCCCACCCACGACGGCCTCCGCTTCTGGCAATACATGGTCGCGGGGTCCATCGCCGGTTCAATCGAGCACATGGCCATGTTCCCGGTCGACACGCTCAAGACCCGGATGCAAGCCCGAACCGGGTTCGACCCGGTTCACCCGACTGGCGTCCGACGAGCCCTCGGTTCGATACTCAAGCTGGAAGGACCTTCGGTGCTGTATCGCGGTATAGCGGCAATGGGCCTCGGCGCGGGCCCGGCCCACGCCGTGTATTTCTCGGTGTACGAGATCTGCAAGGAGAGATTCTCCGGCGGAGTTCCGGCGGGAAACTCCGCCGCGCACGCCGGTGCCGGCGTCTGCGCGACGGTGGCGAGCGACGCCGTGATGACGCCGATGGATGTGGTGAAGCAGAGGTTGCAGCTGAAGAGGAGTCCGTACAAGGGAGTGTGGGATTGCGTGAGGAGAGTGGTGAGGGAAGAAGGGGTGGGCGCGTTTTACGCTTCGTATCGGACGACGGTGGTGATGAACGCGCCCTTCACGGCGGTGCATTTTGCGGCGTATGAGGCGGCGAAGAGAGGGCTCACGGAGGTGTCCTCGCCAGAGAGTGCGGTGGACGAGAGATTGTTGGTTCACGCCACTGCCGGAGCCGCCGCGGGAGCGATGGCTGCAGCGGTGACTACCCCACTTGATGTTGTGAAAACTCAGTTACAATGCCAGGGGGTGTGTGGGTGTGATAAATTTGCAAGAAGTTCGATAGGGCATGTGATTGGAAGAGTGATAAGGAAAGAAGGATATAAGGGACTTATAAGAGGATATATGCCTAGGATGCTCTTTCATGCACCTGCTGCTGCTATCTGTTGGTCCACTTATGAAGCCTCCAAATCTTTCTTTCACCACCATATTTAA 912 0.5855 MATNSISPPPTHDGLRFWQYMVAGSIAGSIEHMAMFPVDTLKTRMQARTGFDPVHPTGVRRALGSILKLEGPSVLYRGIAAMGLGAGPAHAVYFSVYEICKERFSGGVPAGNSAAHAGAGVCATVASDAVMTPMDVVKQRLQLKRSPYKGVWDCVRRVVREEGVGAFYASYRTTVVMNAPFTAVHFAAYEAAKRGLTEVSSPESAVDERLLVHATAGAAAGAMAAAVTTPLDVVKTQLQCQGVCGCDKFARSSIGHVIGRVIRKEGYKGLIRGYMPRMLFHAPAAAICWSTYEASKSFFHHHI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2182 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 195 IPR018108 -
Sto1g2182 303 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Sto1g2182 303 PANTHER MITOFERRIN-LIKE 6 301 - -
Sto1g2182 303 Gene3D Mitochondrial carrier domain 3 144 IPR023395 -
Sto1g2182 303 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Sto1g2182 303 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Sto1g2182 303 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085
Sto1g2182 303 PRINTS Mitochondrial carrier protein signature 168 186 IPR002067 GO:0055085
Sto1g2182 303 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Sto1g2182 303 Pfam Mitochondrial carrier protein 209 301 IPR018108 -
Sto1g2182 303 Pfam Mitochondrial carrier protein 15 105 IPR018108 -
Sto1g2182 303 Pfam Mitochondrial carrier protein 114 197 IPR018108 -
Sto1g2182 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 298 IPR018108 -
Sto1g2182 303 Gene3D Mitochondrial carrier domain 145 302 IPR023395 -
Sto1g2182 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Sto1g2182 303 PANTHER MITOFERRIN-1-RELATED 6 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2182 Sto-Chr1 29980553 29982209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2182 3 300 Chloroplast and Mitochondria Gene Families AT1G07030 69.463 5.19e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2182 K15113 - jre:108982304 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2182 1 29980553 29982209 Sto1g2182 1 29980553 29982209 ECH