Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2150 ATGTCTtcaagggaaagaaaaaaagcaaGTGTTGAACGCAAATCCTCAAATTACATAGACGACGATTTGAAGCAAAAAGTGGAGCCTCAAGAATCCTCAACCTCTTCATCCCAAAATGAATTTCCCATGGTGAGGGTGGAAATATTAGAGAGGGGATTTATGATTAATGTGTTCTCAGAGAAGAATAGTCCAGGCATGCTCGTCTCTGTGCTTGAAGCTTTTGAACAATTGGGGCTTGATGTTCTTGATGCTAGGGTTTCTTGTGAGGATTCTTTCCAGCTTGAAGCTGTGGGTGGATCACAAGATGGTGGAGGACAATGGGACATAGAGAAGGTGAACGAAGTGTTTGAACCACTAGTAGCAGAAGCAGTGATAAAGATACCACTAAGCAGATCAAATCCAAAGGATTCGTGGATGTGGCGATTTAATGCAAACGCTTACAAAGTGGTGCATAACTCCTATTCTCGGACTAACACTTGGACCAGATACAGTAGCGTTTGGAAGAAGATATGGAAGGCAAATCTACTCCCAAAGATTCGATCTTTCTGCTGGAGGGCATGTCGAGGGATCTTGCCGACGTGTATCAACTTAAAGAACAGGGGTGTGGACGTTGATACCCGATGCTGTGTGTGTGGATTAGATGATGAAGACACATGCCATGCTTTAGTAGCATGGCCAGTATTGAAGCCTCTATGGGATAATTACATGCCAGATGTTGGTGGACCAATAAATACAAACGTAGCGTTTGTGGAGTGGTTTTCTAATAATGTGCAGAGAGGGCACGACCGAAACAGAGCAATCAGGGATGGGAAGTGGGAAGCTCCTATGTGGCGTGAGATGAAGGTCAATGTGGATGCAAGTTTGTTGAAACAAGGCAAGGGAGGTATTGGTTGTGTGGTGAGAAATTTCCAAGGTAGGTGTCTAGCTGCTTTTGCCAAAAGGATGAAAAATATTGAAAGTGCAGAATTATTGGAAGCTTTTGCGTTTCTGGAAGGATTGGAATTAGCCAAGAATTTAAGGTGTGATAATATCATACTAGAAGGAGATGCTAAGAAAGTGGCTGATCTAATTCATGGTAGTAGTCAGAATCTATCTCACCTGGGAATGCTTGTAGATGATATAAGGAAAGGCATGAAGAATTTCAGCAGAGTCAAGGTCCAATGGGTGCCGAGAAACAGTAATGCTGTAGCGGATAGGATAGCAAATTTTGCTTGTAATTTAGATCAATCTCAAGTTTGGTTAGAAGATTTTCCCCAGTTCATTTCGGATGTTTTAATTAGTGATTCTGGAAGGGACTCGGCAGTCTTGGCATTGAGCCCTGAAATTGCGGCGGCCGCACTTTTGAGGCAGTTACAGACTGTTTGGCGGTCTGGGGTGGTTCGGGCTGCGTTCACAATGGCCCTGACACCATTGCAGCACGTGGGCGGGGGAACGCCGCCCGGGCCACGAAGGTAA 1455 0.4399 MSSRERKKASVERKSSNYIDDDLKQKVEPQESSTSSSQNEFPMVRVEILERGFMINVFSEKNSPGMLVSVLEAFEQLGLDVLDARVSCEDSFQLEAVGGSQDGGGQWDIEKVNEVFEPLVAEAVIKIPLSRSNPKDSWMWRFNANAYKVVHNSYSRTNTWTRYSSVWKKIWKANLLPKIRSFCWRACRGILPTCINLKNRGVDVDTRCCVCGLDDEDTCHALVAWPVLKPLWDNYMPDVGGPINTNVAFVEWFSNNVQRGHDRNRAIRDGKWEAPMWREMKVNVDASLLKQGKGGIGCVVRNFQGRCLAAFAKRMKNIESAELLEAFAFLEGLELAKNLRCDNIILEGDAKKVADLIHGSSQNLSHLGMLVDDIRKGMKNFSRVKVQWVPRNSNAVADRIANFACNLDQSQVWLEDFPQFISDVLISDSGRDSAVLALSPEIAAAALLRQLQTVWRSGVVRAAFTMALTPLQHVGGGTPPGPRR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2150 484 SUPERFAMILY Ribonuclease H-like 280 411 IPR012337 -
Sto1g2150 484 CDD ACT_UUR-ACR-like 54 108 - -
Sto1g2150 484 CDD RNase_H_like 282 402 IPR044730 -
Sto1g2150 484 Pfam zinc-binding in reverse transcriptase 151 232 IPR026960 -
Sto1g2150 484 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 102 - -
Sto1g2150 484 Pfam Reverse transcriptase-like 283 404 IPR002156 GO:0003676|GO:0004523
Sto1g2150 484 Gene3D - 278 411 IPR036397 GO:0003676
Sto1g2150 484 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 102 - -
Sto1g2150 484 MobiDBLite consensus disorder prediction 1 28 - -
Sto1g2150 484 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2150 Sto-Chr1 29686391 29693200 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2150 - - qsu:112015657 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2150 1 29686391 29693200 Sto9g2598 9 28401054 28404057 ECH
Sto1g2150 1 29686391 29693200 Sto5g1461 5 10014578 10015157 ECH
Sto1g2150 1 29686391 29693200 Sto1g2150 1 29686391 29693200 ECH
Sto1g2150 1 29686391 29693200 Sto9g2258 9 26035824 26037506 ECH
Sto1g2150 1 29686391 29693200 Sto5g4379 5 52412886 52413702 ECH