Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2143 ATGGAGTTGATACTTAGAAAGCATCACGCTATTACTTTAGTGGTAGCATTATGGTGGATTCTCCTCATGCTTTCTTCATCTCATGCACAAAGCAACGAAGAAGCAAATGCATTGGTGAATTGGAAAGCCAGCTTTGACCAACAAAACCAATCTTTCCTCTCTTCATGGACGACCAATGGTACCAACACTAGTAGTAGTCCTTGCGCTTGGATGGGAATTACATGTGATGCATCCAATTACTCTGTTTTCCAAATATCTCTACCAAATATGGGATTAAGAGGTACGCTTCAAAGCTTCAATTTCTCATCTTTCCCCAATCTCCAATTCATTCATCTACAACAAAACTTGTTCTATGGCACCATCCCTCCCCACATTGGACAACTCTCAAGAATCACTTGGATTGATTTGAGTTTCAACAAGTTCAATGATACCATTCCAACCACTATTGGCAATTTGTCCAATACTCTTTCCCATCTtcatttgaataataataataataatctctaTGGACCAATTCCATCTGAGATCACACAACTAAATAGTCTTACTGAACTATGGTTAGGAGGAAATGTTTTCTATGCTCAAATCCCTCGAGATATAGGAGCTCTGAGCAATCTACATGTGCTCAACATTGACACAAgctatctttcagggactatcCCTACTTCTATTGGAAATTTAACTAGCTTGATATATTTGAATCTAAGGGGGAACAAGCTTCATGGCCAAATTCCTAAACAAATAGGCCAGTTGGTGAACCTGAACTTATTATGGCttctatataataatttatctgGTTCCATCCCCGAAGAAATTGGAATGATGAAACAACTTACTCAACttgatttttcaaaaaattatttgtctGGTAACATCCCTCCTACTATTGGAAACATGAGTAAATTGTATTACATTTACCTTTATGAGAATCAGATCTCAGGATCTATTCCATGGGAATTGGGGAAACTCCATGGCCTTCTGGTAATTCAACTATTTAGCAACAATCTCTCTGGTTCAATCCCATATTCTATTTGCAACTTGACAACAAGATTGAGTGATCTTCGCATTGAAGACAACCAACTTTCTGGATCAATTCCTTCTTGTATTGGAGACTTGAGTGTGCTCTCAAGACTTTCTATGCAGTTAAATAAACTTTCTGGACCAATCCCTGATTCAATTGGAAACTTGAGTCAACTCATTAGATTGATAATGAGCTTAAATTCATTTTCTAGATGCATCCCTAATTCAATTGGAAGGTTGAATAATCTCCAAACATTAGATTTGTCTAGAAATACACTTTCTGGACCAATCCCGGCTTCTATAGGAAACCTAAGCAATTTGGCTGGGCTTTCTATTTCTAGAAATGAAATTGTTGGAGCAATTCCTACAAGTATGAAGAACTTGTCAAGACTACAATTTCTTGATCTATCTTCAAATCGCCTCACAAAGATTCCAGAAGAATTAGGATTATTGCGAACAAGAATTGCATATTTGAATTTAGCCAAAAACCATTTCAGCGGCTCAATTCCTCCACAGCTGGGACAGTTGCTCAATTTACTCCAATTGAATCTAAGCCAAAACTCTTTCAACAGCATCCCTTCAAGTTTAGGGAATTTGACTTCTCTCCAAGATCTTGATTTAAGTAGAAATTCTTTATCGGGAGAGATTCCATTGAAGCTTGGAGCATTTCCAGGACTACAGAAGCTAAACATATCGCATAATAATCTCTCCGGTCCTATACCTTCCAACTTTGATACAATGTCAAGCCTGAATTCGATTGACATATCATACAATCAATTGGAAGGACCACTTCCCAATAGTCCAACTTTTCGTAATGCTTCAATGGAGAGATTGAGAAACAACAAAGAGCTTGCTTACACTATGAAAGTGGATGAGAAATGTGATGTTTTTAGTTTTGGAGTGCTGGTTTTGGAAATAGTTTTCGGAAAGCATCCGGGAGATCTCATGATTTCTTTTCCCGCGTCATCATCCTCATCTGTAGCAACAGAAGTTTCTGCAACCAATAATGTGCTATTGAGAGATGTGTTAGACCAAAGAATTCATTATCCTTCAAGCTCAATTGGTAGTGATGAGGATGTGATATTGATGGCGAAAATAGGCTTTTCTTGTGTGAAAACGAATCCTCGTTCACGTCCAACCATGGAGCAAGTTTGCAAGCAGTTTCTTAGGTCCAAATCACCTCTCTTACATCAATTTGACAATATCACACTTGCAGATCTCAACCAAATAGAATATTGA 2259 0.3665 MELILRKHHAITLVVALWWILLMLSSSHAQSNEEANALVNWKASFDQQNQSFLSSWTTNGTNTSSSPCAWMGITCDASNYSVFQISLPNMGLRGTLQSFNFSSFPNLQFIHLQQNLFYGTIPPHIGQLSRITWIDLSFNKFNDTIPTTIGNLSNTLSHLHLNNNNNNLYGPIPSEITQLNSLTELWLGGNVFYAQIPRDIGALSNLHVLNIDTSYLSGTIPTSIGNLTSLIYLNLRGNKLHGQIPKQIGQLVNLNLLWLLYNNLSGSIPEEIGMMKQLTQLDFSKNYLSGNIPPTIGNMSKLYYIYLYENQISGSIPWELGKLHGLLVIQLFSNNLSGSIPYSICNLTTRLSDLRIEDNQLSGSIPSCIGDLSVLSRLSMQLNKLSGPIPDSIGNLSQLIRLIMSLNSFSRCIPNSIGRLNNLQTLDLSRNTLSGPIPASIGNLSNLAGLSISRNEIVGAIPTSMKNLSRLQFLDLSSNRLTKIPEELGLLRTRIAYLNLAKNHFSGSIPPQLGQLLNLLQLNLSQNSFNSIPSSLGNLTSLQDLDLSRNSLSGEIPLKLGAFPGLQKLNISHNNLSGPIPSNFDTMSSLNSIDISYNQLEGPLPNSPTFRNASMERLRNNKELAYTMKVDEKCDVFSFGVLVLEIVFGKHPGDLMISFPASSSSSVATEVSATNNVLLRDVLDQRIHYPSSSIGSDEDVILMAKIGFSCVKTNPRSRPTMEQVCKQFLRSKSPLLHQFDNITLADLNQIEY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2143 752 SUPERFAMILY Protein kinase-like (PK-like) 623 732 IPR011009 -
Sto1g2143 752 SMART LRR_typ_2 516 538 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 468 491 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 104 128 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 539 565 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 179 203 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 420 444 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 227 251 IPR003591 -
Sto1g2143 752 SMART LRR_typ_2 275 299 IPR003591 -
Sto1g2143 752 SUPERFAMILY L domain-like 309 606 - -
Sto1g2143 752 PRINTS Leucine-rich repeat signature 471 484 - -
Sto1g2143 752 PRINTS Leucine-rich repeat signature 539 552 - -
Sto1g2143 752 SMART LRR_sd22_2 275 301 - -
Sto1g2143 752 SMART LRR_sd22_2 372 398 - -
Sto1g2143 752 SMART LRR_sd22_2 468 490 - -
Sto1g2143 752 SMART LRR_sd22_2 420 446 - -
Sto1g2143 752 SMART LRR_sd22_2 128 154 - -
Sto1g2143 752 Gene3D Ribonuclease Inhibitor 194 291 IPR032675 -
Sto1g2143 752 SUPERFAMILY RNI-like 85 386 - -
Sto1g2143 752 Gene3D Ribonuclease Inhibitor 292 382 IPR032675 -
Sto1g2143 752 Gene3D Ribonuclease Inhibitor 493 611 IPR032675 -
Sto1g2143 752 Gene3D Ribonuclease Inhibitor 383 490 IPR032675 -
Sto1g2143 752 ProSiteProfiles Leucine-rich repeat profile. 518 540 IPR001611 GO:0005515
Sto1g2143 752 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Sto1g2143 752 Gene3D Transferase(Phosphotransferase) domain 1 612 733 - -
Sto1g2143 752 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Sto1g2143 752 Pfam Leucine Rich Repeat 566 585 IPR001611 GO:0005515
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 468 607 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 218 409 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 290 489 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 11 347 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 340 529 - -
Sto1g2143 752 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Sto1g2143 752 Pfam Leucine rich repeat 495 552 IPR001611 GO:0005515
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 340 529 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 11 347 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 218 409 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 468 607 - -
Sto1g2143 752 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 290 489 - -
Sto1g2143 752 ProSiteProfiles Leucine-rich repeat profile. 470 491 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2143 Sto-Chr1 29639484 29641919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2143 20 625 Receptor kinase-like Gene Family AT4G08850 38.052 1.24e-120 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sto1g2143 LRR_8 3.2e-09 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2143 - K13468 psom:113346068 439.113