Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2135 ATGCTGAATCGTCGCGGCGGGGAGGAACCGGACGACGTCGTCTCGCAAATGCTTACTGATTATTCTTCTTGCTTGGTTCCCGCCAAATCTGAAGATTCGGAAGATACTTGTAAGAGTACTTCCGCAGTTAAGGAGAGAAGAGGATGTTATAAGAGAAGGAAAACATCACAAACATGGGAGAGGAACTCCGAAGCTCCCATAGATGATGGCCATGCTTGGAGAAAGTATGGCCAAAAGACTATCATGAATGCCAAATTCCCAAGgAACTACTTCAGGTGCACTCACAAGTTTGATCAAGGATGTCTAGCAACCAAACAGGTGCAGATGATTCAAGAAGAGCCTGTGTTGTACAGGACAACCTATTACGGCCATCACACATGTAACAGAAATTTGTTAAACCCTGAGATCATTTTGGATTCTGCTTCTCCAAATTCAGACTCTTCCATATTACTAAGCTTTGACAACAATAATAATTCCCTCTCATCCAAACAAGACCTTCCCTTCTTCTCATCTTCTTCACCATCAACATCACCGAGTAAAGAGTATTGTAAGCAAGAGATTCCTTCATCTTCCTCAGAGGACTACTTGCTCACTAATGAACTTATAAATACTCTTTCTTCAACCTTGGAGTCCAATCACAAGGATGTGATCCCTGATGTGTTGTATGATTCCGTTGATTTTAATGGGTTTGTGGTAGAGAAGAACAATTTGAAAGTCACTTCTCCAAAATCGTTGAAAGGTGTGTATGAGTGTGCCATTGGGAATTTTGGGGTTCCCAAGTATGGAGGTGCCATGGTTGGTTCTGTGGTGTACCCAAAGACGAATCAGAAGGGATGCAAGAGCTTCGATGATGATTCTTTGTTCAAATCAAAGCCAGGAAGCTTTCCTACCTTTGTTCTTGTCGATCGAGGAGATTGCTACTTCACGTTGAAGGCATGGAATGCACAGAATGGTGGAGCGGCAGCTATTCTTGTTGCGGATGACAGGTCAGAGCCACTGATCACCATGGACACTCCAGAAGAAGGGTCTGTTGCAAATGATGAATATGTGGAAAAGATTAGTATTCCTTCTGCCCTTATCAGCAAATCATTGGGCGATAGCATCAAGAAGGCTCTTGAAAGTGGGGAGATGGTTAACATAAATCTTGATTGGAGTGAGACACTTCCACATCCTGATGAGAGAGTAGAGTATGAATTCTGGACAAACAGCAATGATGAGTGTGGACCAAAGTGTGATAGTCAAATTAATTTTGCTAAGAACTTTAAAGGGGTAGCTCAGTTACTTGAGCAGAAAGGATTCACTCAGTTTACTCCTCATTACATAACTTGGTACTGCCCTGAAGCATTTCTCTTGAGCAAACAATGCAAATCTCAGTGCATAAACCATGGGAGGTACTGTGCTCCGGATCCTGAGCAAGATTTCAGTAAAGGGTACGATGGCAAAGATGTTGTTGTTCAAAACTTGCGCCAAGCATGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACAGACTTTGCAATCCGTTGCCCCATGAAAGAGAATAAGTACACTGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAGAAAGATTAAAGATTGTGTTGGCGATCCTAATGCAGATGTTGAAAACCCTGTTCTTAAGGCTGAACAAGAGACACAGATTGGCAAGGGCTCTCGTGGTGATGTTACTATATTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGGAAAAAGGAGCAGTTCTCAAGGCAATCTGTGCAGGTTTTGAAGAGACCACTGAGCCAACTATTTGCTTAACCCCAGATATGCAAacaaatgagtgtttggaaaacaatGGTGGTTGCTGGCAGGACAAATCTGCTAACATTACTGCATGCAGGCTTCAGGAGCCTTGCGGTGTGATTACAACAATGGAGGCTGTTGGAAGGAAAGCCGAGGTGGATGACCATACCAAAGGTTGCAAGTGTCCACCCGGATTCAAGGGCGACGGAGTCCATTCTTGTGAAGATGTGGATGAGTGCAAAGAGAAGATAGCCTGTCAGTGCCCAGAGTGCAAATGCAGGAATACATGGGGGAGTTATGAATGCAGCTGCTCTGGCAACTTTTTCTACATGCAAGAGAATGACATGTGTATGGCTAAATATACTTCTTCAATGACCACCGGCGGTTTTGTTTGGATGGTGATTTTTATCTTGGCTGCTGCTAGTGTTGCGGGATATGCATTTTATAAGTACAGAGTCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAAGCAGAGGTGGCATTCCGTAGTTTTGAACGTTTAGAATTATTTGAATATCCTGAGCTTAAAGAAATATGGTATGGTCAAGTTAGAGAAAtacaagaagatgatgatgatatgcaACATGATAAGGGCCCATCAAGCGGCGAAGATGAAGCATCTGAGAGGGAACCATGGTCAACAAATGAAAGTTTTGGGCTGCCATCGGTGGCAGTAAAAGTGGTAGACGCCACACAGATGCATCAACTGATGGCTGCAACGGCAGAAATTCCAATGCTAACTGTGGAGAGATTTGCATCCTCTGCTTCGGCTTGGTCGGCAACAATGACCTTCGCTGTCTTCATCGCAGAGTTGGGTCTCGTATTATATAAGGTGGCCACGGCACCTAGTGCCATGTTGGTGGTGGCGATGAAGGAGTCCGACTTCGATGCAATAATAGAGAAGATCGACCAAGGTGCCGACCGAAACTTGCGACCAGCGAACATTCCCACACTACCAGATGTAGTTGGGGTTTCAGTGATGACAGCGACACTTGTCGAGCAAGAAGAAATCGCGCAAGAGGAAAACATGATGGAGGCTAACGAGAAAGTTACCGGCGACGACTTTGCCGGCGTTCTCCGAGAAGCCATCGACGGGGACACTTGCGTGTTGGTGAAAAATACTTGTGTCGCTGTCATCAATTTGCGCTCTGTTTCAACTTTCACCGCCTGA 3054 0.4368 MLNRRGGEEPDDVVSQMLTDYSSCLVPAKSEDSEDTCKSTSAVKERRGCYKRRKTSQTWERNSEAPIDDGHAWRKYGQKTIMNAKFPRNYFRCTHKFDQGCLATKQVQMIQEEPVLYRTTYYGHHTCNRNLLNPEIILDSASPNSDSSILLSFDNNNNSLSSKQDLPFFSSSSPSTSPSKEYCKQEIPSSSSEDYLLTNELINTLSSTLESNHKDVIPDVLYDSVDFNGFVVEKNNLKVTSPKSLKGVYECAIGNFGVPKYGGAMVGSVVYPKTNQKGCKSFDDDSLFKSKPGSFPTFVLVDRGDCYFTLKAWNAQNGGAAAILVADDRSEPLITMDTPEEGSVANDEYVEKISIPSALISKSLGDSIKKALESGEMVNINLDWSETLPHPDERVEYEFWTNSNDECGPKCDSQINFAKNFKGVAQLLEQKGFTQFTPHYITWYCPEAFLLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFAIRCPMKENKYTEECSDQVIKSLGADLRKIKDCVGDPNADVENPVLKAEQETQIGKGSRGDVTILPTLVINNRQYRGKLEKGAVLKAICAGFEETTEPTICLTPDMQTNECLENNGGCWQDKSANITACRLQEPCGVITTMEAVGRKAEVDDHTKGCKCPPGFKGDGVHSCEDVDECKEKIACQCPECKCRNTWGSYECSCSGNFFYMQENDMCMAKYTSSMTTGGFVWMVIFILAAASVAGYAFYKYRVQRYMDSEIRAIMAQYMPLDNQAEVAFRSFERLELFEYPELKEIWYGQVREIQEDDDDMQHDKGPSSGEDEASEREPWSTNESFGLPSVAVKVVDATQMHQLMAATAEIPMLTVERFASSASAWSATMTFAVFIAELGLVLYKVATAPSAMLVVAMKESDFDAIIEKIDQGADRNLRPANIPTLPDVVGVSVMTATLVEQEEIAQEENMMEANEKVTGDDFAGVLREAIDGDTCVLVKNTCVAVINLRSVSTFTA 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2135 1017 ProSitePatterns Calcium-binding EGF-like domain signature. 686 712 IPR018097 GO:0005509
Sto1g2135 1017 Gene3D WRKY domain 52 129 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto1g2135 1017 SUPERFAMILY WRKY DNA-binding domain 64 128 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto1g2135 1017 Gene3D - 228 391 - -
Sto1g2135 1017 PANTHER VACUOLAR-SORTING RECEPTOR 1 669 775 - -
Sto1g2135 1017 PANTHER VACUOLAR-SORTING RECEPTOR 1 227 646 - -
Sto1g2135 1017 SUPERFAMILY Growth factor receptor domain 611 729 IPR009030 -
Sto1g2135 1017 ProSiteProfiles WRKY domain profile. 62 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g2135 1017 Pfam WRKY DNA -binding domain 68 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g2135 1017 MobiDBLite consensus disorder prediction 817 839 - -
Sto1g2135 1017 CDD EGF_CA 686 718 - -
Sto1g2135 1017 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 227 646 - -
Sto1g2135 1017 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 669 775 - -
Sto1g2135 1017 SMART WRKY_cls 67 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g2135 1017 Gene3D Plasmodium vivax P25 domain 594 735 - -
Sto1g2135 1017 SUPERFAMILY PA domain 298 378 IPR046450 -
Sto1g2135 1017 MobiDBLite consensus disorder prediction 164 184 - -
Sto1g2135 1017 Pfam PA domain 267 368 IPR003137 -
Sto1g2135 1017 SMART egfca_6 686 728 IPR001881 GO:0005509
Sto1g2135 1017 MobiDBLite consensus disorder prediction 817 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2135 Sto-Chr1 29562637 29606508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2135 230 784 Miscellaneous Gene Families AT3G52850 69.192 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto1g2135 PA 2.2e-11 CL0364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2135 - - gmx:100815266 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0381 6 4255408 4258997 Sto1g2135 1 29562637 29606508 CCT