Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2091 ATGGAAGCATCTGCTAGCAATTCCGACATGTTCAGAGCTCCTTCTGGCACTTCTAATTCAAGAAGGTACGGAATCCTATCCGCCTCGAATATTTTTCAGGCTCCTCTGTCGGTGTTGTTGGAGTATACGGGGATTCTACGAAGCAGGTCCCACCACCAAGAATCGGAGAGCTTAATTGGTTCCCGACTCTCTTCTGGTTTCCGTGATCATCTTCATAGTCGCCTTGAGTCGGTCCCTAATGATGGGGAGCTCTCCATTAGAATTATTGGGGCTGGAGAACAGGATCTTGATAGAGAAGGCAATGGGTTAGCCATTGGGCAGGTCAGGGAAGGGCTTTCCCAGAATGAGGTATCACTGCAACCCGTGGATGCTACTGGGATGCCTGTCACCACACTGCCTCCAACTTCTGAGAGCCTGGGGGAGTCAAGGGGTGAACGTGTTTCAGTGGAGGGTGTTTCAGAACCTGTAAATGGAACTGCAGATGCCGAAGCTGGTGATGGAGTTGGGGCTAATGGTAGGGACTCTTCCTACCAGAGATACGATATTCAGCAGGCTGCCCGCTGGATTGAACAGGTGTTGCCCTTCTCCCTACTACTGTTGGTGGTCTTCATCCGGCAGCATTTACAAGGATTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGAAATTCTACGCAAGCAAACTGCTCTGAAGGGAGAGAGGAAAATTCCTGTTCTGGTTGGCATATCTATTGCATTTTCACTTCACGTGATTGCCATTTATTGGTGGTATCAGAATGAAGATCTGTTGTATCCATTAGTCATGCTTCCTCCAAAAGCTATACCTCCTTTCTGGCATGCTATTTTCATCATCATGGTGAACGGTGTGTTCATGTCCATTAGTTACTGGCTACGAGCCTACAATTCATATGGAAAATGTTTCCGTGATGATACTTTGGTCCGCCAGTCAGCAATGGTACTTAAGTGTATTTTATTGATGTATTACAAGAATAGCAGAGGCAGAAATTATCGTAAACAGGGGCAAATGCTGACCTTAGTTGAGTACCTCCTCCTGCTTTACCGTGCCTTATTGCCGACACCAGTATGGTATCGTTTCTTTTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTAATGACAGGATTGTATCTCACATTTAAGCTGACATCTGTTGTGGAAAAGGTGCAATCCTTCTTTACTGCATTAAAAGCATTGTCACGGAAAGAAGTTCATTATGGGGCTTATGCGACATCAGAGCAGGTCAGTGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCACCAATCTTACTTCGTTGCAAACACATCTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGATCTGAGATCATTTGGTGATGGTTCTACTAGTCTGTTTTTCCAGTTATTCTAA 1482 0.4507 MEASASNSDMFRAPSGTSNSRRYGILSASNIFQAPLSVLLEYTGILRSRSHHQESESLIGSRLSSGFRDHLHSRLESVPNDGELSIRIIGAGEQDLDREGNGLAIGQVREGLSQNEVSLQPVDATGMPVTTLPPTSESLGESRGERVSVEGVSEPVNGTADAEAGDGVGANGRDSSYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNEILRKQTALKGERKIPVLVGISIAFSLHVIAIYWWYQNEDLLYPLVMLPPKAIPPFWHAIFIIMVNGVFMSISYWLRAYNSYGKCFRDDTLVRQSAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2091 493 Pfam Zinc finger, C3HC4 type (RING finger) 430 473 - -
Sto1g2091 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 480 IPR013083 -
Sto1g2091 493 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 313 493 - -
Sto1g2091 493 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 293 - -
Sto1g2091 493 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
Sto1g2091 493 MobiDBLite consensus disorder prediction 124 145 - -
Sto1g2091 493 SMART ring_2 432 469 IPR001841 -
Sto1g2091 493 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Sto1g2091 493 MobiDBLite consensus disorder prediction 124 142 - -
Sto1g2091 493 CDD RING-HC_RNFT1_like 431 470 - -
Sto1g2091 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 313 493 IPR044235 GO:0061630|GO:1904294
Sto1g2091 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 293 IPR044235 GO:0061630|GO:1904294
Sto1g2091 493 SUPERFAMILY RING/U-box 427 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2091 Sto-Chr1 29214909 29219269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2091 1 493 C3H Transcription Factor Family AT5G01960 64.718 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2091 - K22379 fve:101297163 716.842