Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2088 ATGAGGGGAAAGTTGAGCATAATGAAGAACGTTAATGGAGTTTACATGGTACAGCTTGGAAATGGGATGCTTACTGCATTTAGGAGATATAAAGAAGCCAAACCAGGAATTAACATTAAAACCCCAAATGGGTTTAATGTGATTCCCATTTCAATGGTTGAGAACCATAAATTGGAGAATCAAAGGAAGGAAGAAATGGTTTGTGAGGACACTGGTCTGCTAGTTGACCATTCTGTCCAGGTTGCAGTATGTGCACTCTGCCAAAAGGCCCTATCTCCtgaaaatgagataacaaatgATCTTGCACCCAGTGGTGTGTGTGGTgattgtaaatttttattacttgAAGATTTTGGGACTCCTGCCCAAAGCTCTCGAAGAATGCCTAGGAGAAGATCAAGGTACAGCAGTTCTGAATCAATTGGGAATAGTTCATCACAGCAGCTCCCGCATATGGTTAATTCTGTGATGCAAAATCAATCCTCTGCATCTGTGGAGGATGATCAGCCTGTTGATGGTGATACCCCTGCTTGGTTATTGCAGTATGCTAGTGCTCATAATACCCCTAGTGGTAGTGGGTCTCGAAGATGGAGGCGGGTTTTCTCAGATACTGATAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCGAATGCAAGTGTAAGGCGTTACAGAGTCCCCAATGGCGAGACTGATTCTTTCTCTTTCAGTGCTTATGGAGaagaagaggggagGGAATGGGAAGTTGCTGAGGCTGAGGAAGCTGAGGCCACTGCCCGCCTTAGAATATTTTTCACCTCAAGTCCAAGTGAGAGTAGTGGCCACATTAATTGGGAACGACGGTTTAATTCTCCTGAATCTGAGGTAATATTTAGCAGGAGATTTAGGGATAGATGGCAAGCTTACAGTGATCACAGCTTCACTAACATGGATGAGGATTTTGCGGATTATCTTGAAGCTAGGCAATTTGAAGATTTACTTGAGCATCTTGCTGATAATGACAGCTCAAGACGTGGAGCGCCTCCTGCAGCTGTGTCTTTCGTGAATAGTCTGCCCCGTGTTGTTATTGGTAAGGAACATGAGAAGCATGATGAACTAGCATGTGCCATTTGCAAGGATCCCTTACTGCCAGGCACTGAAGTAAATAAGCTTCCCTGCTCCCACCTCTATCATGCATGTTGCATTTTGCCATGGTTGAGTGCACGAAATTCCTGCCCCCTTTGTCGTTATGAGCTTCCAACAGATGATAAGGAATATGAGGAGGGAAAGCGCAATATCAGTGGTAGAAATGAAATCCATCAAGCACAGCAGCTAGATGTGACAGATGACAGTTCCTCTGATGGATCTGAAGCCAATGGAGAGGATGATACTAATCAAGGTCTATTGCAGCAGAGAGAACTTTCGGACATGGTTCCTGTAGGTCATCAATCTGCTGTAGGGGGTAGGAGAGGAAGATGGTTTTTCCTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCCTATGGTTAGGTAACCCTCTAATTGAAGGAAGTAGACAAATGGGCCACTGCAACTTACCTGGGCAAAATCAGCATCAGGTTCATGTATCTACCTCACCCAACCAAAGGCAGGATAGAAGCAGAAGATGGTGGTGCTTTTTCTAA 1665 0.4312 MRGKLSIMKNVNGVYMVQLGNGMLTAFRRYKEAKPGINIKTPNGFNVIPISMVENHKLENQRKEEMVCEDTGLLVDHSVQVAVCALCQKALSPENEITNDLAPSGVCGDCKFLLLEDFGTPAQSSRRMPRRRSRYSSSESIGNSSSQQLPHMVNSVMQNQSSASVEDDQPVDGDTPAWLLQYASAHNTPSGSGSRRWRRVFSDTDSDGFDNWSSLYGENESNASVRRYRVPNGETDSFSFSAYGEEEGREWEVAEAEEAEATARLRIFFTSSPSESSGHINWERRFNSPESEVIFSRRFRDRWQAYSDHSFTNMDEDFADYLEARQFEDLLEHLADNDSSRRGAPPAAVSFVNSLPRVVIGKEHEKHDELACAICKDPLLPGTEVNKLPCSHLYHACCILPWLSARNSCPLCRYELPTDDKEYEEGKRNISGRNEIHQAQQLDVTDDSSSDGSEANGEDDTNQGLLQQRELSDMVPVGHQSAVGGRRGRWFFLAAAPIVSLVGIVLVLWLGNPLIEGSRQMGHCNLPGQNQHQVHVSTSPNQRQDRSRRWWCFF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2088 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 419 IPR013083 -
Sto1g2088 554 MobiDBLite consensus disorder prediction 427 461 - -
Sto1g2088 554 MobiDBLite consensus disorder prediction 135 149 - -
Sto1g2088 554 PANTHER OS06G0101300 PROTEIN 313 484 - -
Sto1g2088 554 SMART ring_2 372 412 IPR001841 -
Sto1g2088 554 Pfam Ring finger domain 371 413 IPR001841 -
Sto1g2088 554 ProSiteProfiles Zinc finger RING-type profile. 372 413 IPR001841 -
Sto1g2088 554 SUPERFAMILY RING/U-box 353 419 - -
Sto1g2088 554 MobiDBLite consensus disorder prediction 433 461 - -
Sto1g2088 554 MobiDBLite consensus disorder prediction 123 149 - -
Sto1g2088 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 313 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2088 Sto-Chr1 29199245 29205029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2088 77 554 C3H Transcription Factor Family AT5G01980 39.630 3.95e-99 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2088 - - gmx:100797923 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2088 1 29199245 29205029 Sto1g2088 1 29199245 29205029 ECH