Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2080 ATGGCTGCTTGTGCTTTGATCAGTACTACAAGTGGCAGTGATGATAATGCCAATGTGAATGCCCCACCTACTACTGCGTCCAATTCTAGTAGTGGTGCAAGTGTCACGGTCCCCAACTACTCCACTATGCTTCTACCTTCTTCCACCAATCTCACCACCATGACGTCACCTCCTAATTCCACTGCTATTGCTTCTTCCGACTACGCTACTACCACTCACCGCCATTGCGGAGAAACCCTCTCGCTTCACCATCTTCAACAGCAGCCACAACCACCGCCGCAACAACTTCTCCAGTCTCAGATTCAGAGCCCTGCGGCGCCGGCGGTTTGTGGATTCTCCGGCTTGCCGTTGTTTCCATCGGAGAGAAATAATAACCGTGATACCACCGTTAGTACTGCTGCGAGTGTGGACGTTACGGACATCGTCCGGCCTTCTTCCATGGAAGATACTTCAGCCACGGCTTGGATCGACGGCATCTTGAAGGATCTCATCCATAGCTCCACCGCTGTTTCCATTCCTCAGCTTATCAACAACGTGAGGGAGATTATTTATCCTTGTAACCCGAACCTAGCCGTCGTTCTTGAGTACAGGCTCCGCCTTCTCTCCTCGGCGACGACGACGACGGATTCTGTCCCGAACTATGGTGAGAAGAAGAGGACGGAAGGCGCGGCGGCGGTTCCGTTGGCGCCGGTAGGTTTGAGCCAGAGGCCGTTGGGTCCGCAAGTGGTGGGACCCTCCGTTTCTCCGGCTGTTATGAATCAGATGTACTCGAATTGGATAGTCCCGCCGACGCCGACGATTACTGCGTTGCCTCACGACGGAAGCGGCAACGCTATTCCGCCATCTCCGCTGTCATCTTCCAATCATCAAGGCTATTCGCCGTCGCAGGAACAGCAATTTCACGAGAATCAGAATCAAGAAGGAGGAGTTTCTTCTCCGTGTGAGAATCGAGCAGCTGCAACAACGACGGCAGCGGCGGCGACGACTACAGCAGAAATCATGCTAAcgaaaaggaagaaagaagagaTGCGGCAACAGAAGAGAGACGAAGAAGGATTACACCTTCTCACCTTACTGCTTCAGTGTGCGGAAGCCGTAGCAGCAGACAACTTCGAAGAAGCAAACAAGATGCTGCTCGAGATCTCCCAACTCTCGACTCCATTCGGCACGTCGGCGCAGCGAGTCGCCGCCTATTTCTCCGAAGCCATATCGGCGAGGCTAGTGAGCTCGTGCCTAGGAATATACGCCGCACTCCCTACAGTGCCTCACAGCCAGAAGATCGTATCCGCATTCCAAGTCTTCAACGGAATCAGTCCTTTCGTCAAGTTCTCGCACTTCACTGCAAATCAAGCAATACAAGAAGCGTtcgagagagaagagagagtacACATCATAGATCTAGATATAATGCAAGGGTTACAATGGCCAGGACTCTTTCACATTCTAGCTTCAAGACCAGGTGGACCACCGTTCGTGAGACTCACGGGGCTCGGAACTTCCATGGAAGCTCTGGAAGCCACCGGAAAGCGGCTATCGGATTTTGCTAACAAACTCGGCCTCCCTTTCGAGTTCATCCCGGTGGCCGAAAAAGTAGGAAATCTCGATCCGGAGAGACTCAGTGTAAGCAAAACGGAAGCCGTTGCTGTTCATTGGCTTCAACATTCACTCTACGACGTCACTGGCTCTGATACAAACACGCTTTGGCTTCTCCAAAGATTGCAACCGAAAGTGGTGACGGTGGTGGAGCAGGATCTGAGCCATGCGGGTTCGTTCTTGGGGAGATTTGTGGAAGCCATACATTACTACTCAGCACTGTTCGATTCGCTGGGTTCGAGCTATGGGGAGGAGAGTGAAGAGAGGCATGTGGTGGAGCAGCAGCTTCTGTCCAGGGAGATTCGGAACGTGCTGGCGGTGGGGGGTCCCTCGCGAACCGGAGAGATGAAGTTCCATAACTGGAGGGAGAAGCTTCAGCAATGTGGGTTCAGAGGGATATCACTTGCTGGTAATGCCGCCACACAGGCCAGTTTGCTTCTTGGGATGTTCCCTTCCGACGGGTATACCCTAGTGGAGGACAACGGTACCCTTAAATTGGGGTGGAAGGACCTTTGCTTGCTCACTGCTTCGGCTTGGAGGCCTCCTTTCCACAATACTAGTAGCAGTGGTGGCATCATGCAGCATTGA 2181 0.5199 MAACALISTTSGSDDNANVNAPPTTASNSSSGASVTVPNYSTMLLPSSTNLTTMTSPPNSTAIASSDYATTTHRHCGETLSLHHLQQQPQPPPQQLLQSQIQSPAAPAVCGFSGLPLFPSERNNNRDTTVSTAASVDVTDIVRPSSMEDTSATAWIDGILKDLIHSSTAVSIPQLINNVREIIYPCNPNLAVVLEYRLRLLSSATTTTDSVPNYGEKKRTEGAAAVPLAPVGLSQRPLGPQVVGPSVSPAVMNQMYSNWIVPPTPTITALPHDGSGNAIPPSPLSSSNHQGYSPSQEQQFHENQNQEGGVSSPCENRAAATTTAAAATTTAEIMLTKRKKEEMRQQKRDEEGLHLLTLLLQCAEAVAADNFEEANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYAALPTVPHSQKIVSAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFIPVAEKVGNLDPERLSVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLQPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEMKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPPFHNTSSSGGIMQH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2080 726 ProSiteProfiles GRAS family profile. 346 711 IPR005202 -
Sto1g2080 726 MobiDBLite consensus disorder prediction 279 326 - -
Sto1g2080 726 MobiDBLite consensus disorder prediction 51 70 - -
Sto1g2080 726 MobiDBLite consensus disorder prediction 267 326 - -
Sto1g2080 726 PANTHER PROTEIN SCARECROW 84 713 - -
Sto1g2080 726 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 713 IPR005202 -
Sto1g2080 726 Pfam GRAS domain family 356 711 IPR005202 -
Sto1g2080 726 MobiDBLite consensus disorder prediction 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2080 Sto-Chr1 29129090 29131695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2080 304 712 GRAS Transcription Factor Family AT3G54220 81.598 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto1g2080 GRAS 4.1e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2080 - - gmx:100803919 838.95