Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2019 ATGAAGCCTTCTTTTTTCAAGGTTATGATCAACGGTTCCTCCTCTCCCTTGCAAATCCCACCCTATTTTGTGAAGAAATATGGGAAGCAAATACCAAACAAGGCAAAAATTGAGGCTTGTGATGGAAAATTATGGGAAGTCGAAGTGCAAAAGATGGGGGGAAAATTTAGTTTCAGTAAGGGATGGGGAAATTTTGCTGAAGAAAATAAGGTGAAATTTGGGGATTTTTTGCTCTTCAAATTATTGGCAGATTCATCAACATTCAAGGTCAATATCTATGGAAAAACATGCTGTGTGAAGGAATTTCCTTCTGAACATCTTAATGGCAATAATGCTAAGGAAAAAGAAGCAGATCAGAAGAAAGTGGGAGATCAAGGTAAAAGAAAATGGGTTGATGAAGTAgtttttgatgatgatgatgatgattataaCAAGAATGAAGAATTGAGAGGTGGTGCAAGAAGGAAGAATTCTGAatttgagaaagagaaagatttTGAAGAGGATGTGATTGAAATTGATTCTGATTCTTTTCATGACAAGTCTCGTATTTCGGAGCAGAGGAGGTGGAAAGAGAGAACaaaagcagaagaagaagaaataaaattcaATTCTGAGTATCCTTTCTTCCAAGTTAAACTCACCTCCTCAAATATCACTGGATATCTGTATATTCCAAAACACTTCAGGCAACAGATGAATATGAAGAAGAAAGAGCAAAAGGTGAAATTTCAGATATGCAATGAATTCTATTGTACGGGTTTTCATTTCATCTATGAAGTTCGTCATGGCACCTTAAGGGAACTCAGAATATCTCAGGGATGGAGACAATTTGTCAAGAAGTATGATCTCAAACTTGAAGATTTGTGCATCTTTGAAATGATCAAaagtgatggtgatggtgatgatgatgatgatgaagtcaTCTTCATTGTTCATGTTCATAGATGGGATGGTGCAAAATCAGAGTTTGTTAAGATATATTGA 987 0.3232 MKPSFFKVMINGSSSPLQIPPYFVKKYGKQIPNKAKIEACDGKLWEVEVQKMGGKFSFSKGWGNFAEENKVKFGDFLLFKLLADSSTFKVNIYGKTCCVKEFPSEHLNGNNAKEKEADQKKVGDQGKRKWVDEVVFDDDDDDYNKNEELRGGARRKNSEFEKEKDFEEDVIEIDSDSFHDKSRISEQRRWKERTKAEEEEIKFNSEYPFFQVKLTSSNITGYLYIPKHFRQQMNMKKKEQKVKFQICNEFYCTGFHFIYEVRHGTLRELRISQGWRQFVKKYDLKLEDLCIFEMIKSDGDGDDDDDEVIFIVHVHRWDGAKSEFVKIY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2019 328 PANTHER B3 DOMAIN-CONTAINING 2 315 - -
Sto1g2019 328 Gene3D - 1 98 IPR015300 -
Sto1g2019 328 SUPERFAMILY DNA-binding pseudobarrel domain 203 318 IPR015300 -
Sto1g2019 328 SMART B3_2 209 303 IPR003340 GO:0003677
Sto1g2019 328 SMART B3_2 5 96 IPR003340 GO:0003677
Sto1g2019 328 CDD B3_DNA 208 316 IPR003340 GO:0003677
Sto1g2019 328 Gene3D - 189 318 IPR015300 -
Sto1g2019 328 Pfam B3 DNA binding domain 5 93 IPR003340 GO:0003677
Sto1g2019 328 Pfam B3 DNA binding domain 209 297 IPR003340 GO:0003677
Sto1g2019 328 ProSiteProfiles B3 DNA-binding domain profile. 2 96 IPR003340 GO:0003677
Sto1g2019 328 CDD B3_DNA 3 93 IPR003340 GO:0003677
Sto1g2019 328 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2019 Sto-Chr1 28598997 28600703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2019 1 95 REM Transcription Factor Family AT3G53310 33.333 3.87e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto1g2019 B3 4.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2019 - - pper:18770317 116.701