Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2018 ATGGATGCTTCTTCGCATTACGTAACAAAACTCAATAAGCCTTCTTTTCTCAAGGTTATGATCGATGACGATTTCTCCACTCGCTTGCGAATCCCACCAACTTTTGTGAAGAAATATGGGAAGAAAATACCAAAGAAAGCAAAAATCGAGGCTTGTGATGGAAAATTATGGGAAGTTGAAGTGCAAAAGGTTGGAGGAATTTTTAGTTTCGGTGAGGGATGGGGAAATTTTGTGCAAGAAACTAAGGTGGAATTTGAGGACCTCTTGCGCTTCAAATTATTGGCAGATTCATCAAAATTCAAGGTCAAAATCTATGGAAAAACATGCTGTGAGAAGGAACTTCCTTCTGAACATGTCCATGGTAATGTTAAAGAAAAACAAGATCAGAGAAAAAGAAGTTGGGTAGATgaagttgatgatgatgatgatgaagaatgtGCTAGAAGGAAGAATTGTGAGTTGGAGAAAGATAGAGATTTTGAAGAGGATGATGTAATGGAAACTGATTCTGATTCTTTTGATGACAAGACCGGTGTTTTGGAGCAGAGAAGGTGGAAAGAGAGAACAAAAGCAGAAGATGAACAAATAAAATTCAATTCTCAATATCCTTTCTTCCAAGTTAAACTCACCTCCTCATATGTCAATGGTGGTTATCTGCATATACCAAAAAACTTCAGGAAACACATGATGAAGATGAGGAAGAAAGAGCAAAAGGTGAAATTTCAGATGTGCAATGAATTTTGTACTATGGGTCTTCACTTCATCAACGAAGACCTTATGAGGGAAATCAGAATATCTCAGGGATGGAGCTTGTTTGTGAAGAAGTATGATCTGAAAATGGCAGATTTGTGCATCTTTGAAATGATCacaagtgatgatgatgatgatgaagtcaTCTTCATTGTTCATGTTCATAGATGGGATGGTGGAAAATCAGAGTTTGTTAAGATATATTGA 957 0.348 MDASSHYVTKLNKPSFLKVMIDDDFSTRLRIPPTFVKKYGKKIPKKAKIEACDGKLWEVEVQKVGGIFSFGEGWGNFVQETKVEFEDLLRFKLLADSSKFKVKIYGKTCCEKELPSEHVHGNVKEKQDQRKRSWVDEVDDDDDEECARRKNCELEKDRDFEEDDVMETDSDSFDDKTGVLEQRRWKERTKAEDEQIKFNSQYPFFQVKLTSSYVNGGYLHIPKNFRKHMMKMRKKEQKVKFQMCNEFCTMGLHFINEDLMREIRISQGWSLFVKKYDLKMADLCIFEMITSDDDDDEVIFIVHVHRWDGGKSEFVKIY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2018 318 CDD B3_DNA 14 105 IPR003340 GO:0003677
Sto1g2018 318 SUPERFAMILY DNA-binding pseudobarrel domain 198 308 IPR015300 -
Sto1g2018 318 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Sto1g2018 318 Gene3D - 7 110 IPR015300 -
Sto1g2018 318 SMART B3_2 16 108 IPR003340 GO:0003677
Sto1g2018 318 SMART B3_2 204 306 IPR003340 GO:0003677
Sto1g2018 318 Gene3D - 184 308 IPR015300 -
Sto1g2018 318 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Sto1g2018 318 Pfam B3 DNA binding domain 204 295 IPR003340 GO:0003677
Sto1g2018 318 PANTHER B3 DOMAIN-CONTAINING 9 305 - -
Sto1g2018 318 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Sto1g2018 318 CDD B3_DNA 203 306 IPR003340 GO:0003677
Sto1g2018 318 ProSiteProfiles B3 DNA-binding domain profile. 204 308 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2018 Sto-Chr1 28595147 28597207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2018 16 293 B3 DNA Binding Superfamily AT5G66980 24.759 2.05e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto1g2018 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2018 - - csin:114274611 116.701