Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2017 ATGGATGCAAAACCCAAGAAGCCTTCTTTTTTCAAGGTTATTATCAACCCCGATTTCTCCACTCGCTTGCAAATCCCACCAGCTTTTGTGAAGAAATTTGGGAGGCAAATACCAAACAAGGCAAAAATTGAGACTTGTGATCATGGAAAATTATGGGAAGTTGAAGTGCAAAATCTTGGAGGGATTTTCAGTTTCAGTAAGGGATGGGGGAATTTTGTGGAAGAAACTAAGGTGGAATTAGGGGACTTCTTGACCTTCAAATTATTGGCAGATTCATCAAAATTCAAGGTCAAAATCTATGGGAAAACATGCTGTGAGAAGGAACTTCCTTATGAACATCTTCATGGTGGTGCAAGAAGGAAGAATTATGAATCTGAGAAAGATAAAGATTTTGAAGAAGAGGATCTAATTGAAATTGATTCTGATTCTTTTGATGACAAGCCTGGTGTTTTGGAGCAGAGAAGGAGGAAACAGAGAGCAAAAGCAGAAGATGAAGAAGTAAAATTCAATTCTCAGTATCCTTTCTTCCAAGTTAAACTCACCCCCTCAAATATCATTGGTGGTTATCtgTATATACCAAAACACTTCAGGAAACatatgaagatgatgaagaaagaGCAAAAGGTGAAATTTGAGATATGCAAGGAATTTTCTACTATGGGTCTTCATTTCATCAACGAAGATGGATGTAACGAGGAGACGATAAAGGACATCAGGATATGTCAGGGATGGAGAGTATTTGTGAAGAAGGCAAGAAAATCTGATTGGACCATCACGTTCTAA 783 0.3691 MDAKPKKPSFFKVIINPDFSTRLQIPPAFVKKFGRQIPNKAKIETCDHGKLWEVEVQNLGGIFSFSKGWGNFVEETKVELGDFLTFKLLADSSKFKVKIYGKTCCEKELPYEHLHGGARRKNYESEKDKDFEEEDLIEIDSDSFDDKPGVLEQRRRKQRAKAEDEEVKFNSQYPFFQVKLTPSNIIGGYLYIPKHFRKHMKMMKKEQKVKFEICKEFSTMGLHFINEDGCNEETIKDIRICQGWRVFVKKARKSDWTITF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2017 260 Gene3D - 2 105 IPR015300 -
Sto1g2017 260 SUPERFAMILY DNA-binding pseudobarrel domain 4 105 IPR015300 -
Sto1g2017 260 Gene3D - 154 255 IPR015300 -
Sto1g2017 260 SMART B3_2 10 103 IPR003340 GO:0003677
Sto1g2017 260 Pfam B3 DNA binding domain 10 101 IPR003340 GO:0003677
Sto1g2017 260 CDD B3_DNA 8 100 IPR003340 GO:0003677
Sto1g2017 260 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Sto1g2017 260 PANTHER B3 DOMAIN-CONTAINING 5 250 - -
Sto1g2017 260 SUPERFAMILY DNA-binding pseudobarrel domain 169 249 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2017 Sto-Chr1 28590409 28592569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2017 10 167 B3 DNA Binding Superfamily AT5G66980 32.515 4.53e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto1g2017 B3 9.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2017 - - vvi:100265476 103.99