Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2015 TTGTCTAATGCCTCGGATCGAAGTGAAAAGTCTCTGTCGTCTTCTTCAGCTTTCTCTCTGCCATCATCACCCGAAAAAGTGTTTGAGCATGGTTTGGATCAGTCTCCATGTCTTTCAAATGTTTCAGATCAGTATAGGCAATCTCCTCTGCTGCCACGGACTTTGTCACCGACCCTGCTTTCACCAGAAAGAGAATTAGACAACACTTCACATCATTCAGCAGCCATTGAAAATGTTGTGGATCAAAGCAGAGAATCTCCagcccctcctcctcctcaaccTCAGCGGAAGCAGTGGGAGATTCCAATTCTGTCAACTCTGATGGGCCAACCAGCAAGATCCGAACatgttttggatcaaaatgtGGAATCTCCagcacctcctcctcctccaacaCAGAGGAAACATTGGGAGATTCCAGTCCTCTCAACACTCAATGCCACTGATCAGCCAGTTTCTAGGCCACCAGAACTAATACCGCCTTCGAGGCCTTTTGTGTTGCCAAACCCCACAACAAATGTTTCTCCTGTTGAGTTGCCCCCAAATTCTCAAAATATGGGGATAACTGAGGAGACACCAAAACCAAAACTGAAGCCACTGCATTGGGATAAAGTGAGAGCAAGCTCTGATCGTGAAATGGTGTGGGATCAATTGAGATCAAGCTCTTTTAAATTGAACGAGGAAATGATTGAGACATTGTTTGTTGTGAATACACCAAATCCGAAACCAAAGGATACTACACCACGCTCGGTTCTTCCCACGCCAAATCAGGAGGGCAGAGTACTTGATCCTAAAAAGTCTCAGAATATTGCAATCTTGCTAAGAGCGCTTAATGTTACTATTGAAGAAGTTTGTGAAGCACTATTAGAAGGTAGCGCCGAGACACTTGGAACAGAGCTACTGGAAAGCTTGTTAAAGATGGCACCAAGCAAGGAAGAAGAACGCAAACTGAAGGAACACAGGGATGACTCACCGACCAAGCTTGGTCCTGCTGAGAAATTCTTGAAGGCAGTGCTTGATGTACCATTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATTGCTAATTTTGAGTCTGAAGTGGAGTATCTCAGGAAGTCTTTTGAAACTCTAGAGGTTGCCTGTGAAGAGCTGCGAAACAGTAGAATGTTTCTGAAGCTTCTAGAAGCTGTGCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGTGGCGATGCACGTGCCTTCAAGCTTGATACACTTCTCAAGCTTGTTGATGTTAAAGGAGCTGACGGGAAGACCACCCTACTGCATTTTGTTGTACAGGAAATTATAAGAACCGAAGGTGCTCGTCTCTCGAGTAATACTGAAACTCCAAACGCTACTTTGAGTGAAGATGCCAAGTGTCGGAGGCTTGGTTTACAAGTTGTGTCTAGTTTGTGTTCAGATCTAGCAAATGTCAAAAAGGCTGCTGCAATGGATTCTGAAGTGCTCAACGGTGAAGTCTCTAAACTTTCTAGAGGAATTGCACACATTACGGATGTGGTGCAATTAACCAAAACCATAGAAGATGATGAAAGCAGTAATAAATTTACGGAATCAATGAATAAATTCATGAGAATGGCTGAGGAGGAGATCCTAAAAATTCAAGCGCATGAAAGTGTTGCTCTGTCACTGGTGAAGGAGATTACAGAGTATTTCCACGGGAACCTGACGAAGGAAGAAGCTCATCCGTTCAGAATCTTCATGGTGGTAAGAGACTTCTTAACGGTTCTTGACCGAGTCTGCAAAGAAGTCGGTATGATCAATGAGCGAACCACGGTTAGTTCTGCTCACAAATTCCCAGTCCCAGTAAACCCTATGCTTCCACAACCCCTTCCTGGATTATATGGAAGGAGACAAAACAGCTCTTCAGATGATGACAATCCATCTCCTTAG 1920 0.4266 LSNASDRSEKSLSSSSAFSLPSSPEKVFEHGLDQSPCLSNVSDQYRQSPLLPRTLSPTLLSPERELDNTSHHSAAIENVVDQSRESPAPPPPQPQRKQWEIPILSTLMGQPARSEHVLDQNVESPAPPPPPTQRKHWEIPVLSTLNATDQPVSRPPELIPPSRPFVLPNPTTNVSPVELPPNSQNMGITEETPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLPTPNQEGRVLDPKKSQNIAILLRALNVTIEEVCEALLEGSAETLGTELLESLLKMAPSKEEERKLKEHRDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFETLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDARAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSSNTETPNATLSEDAKCRRLGLQVVSSLCSDLANVKKAAAMDSEVLNGEVSKLSRGIAHITDVVQLTKTIEDDESSNKFTESMNKFMRMAEEEILKIQAHESVALSLVKEITEYFHGNLTKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTTVSSAHKFPVPVNPMLPQPLPGLYGRRQNSSSDDDNPSP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2015 639 SUPERFAMILY Formin homology 2 domain (FH2 domain) 87 598 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 1 99 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 239 254 - -
Sto1g2015 639 Pfam Formin Homology 2 Domain 190 586 IPR015425 -
Sto1g2015 639 MobiDBLite consensus disorder prediction 35 55 - -
Sto1g2015 639 Gene3D Formin, FH2 domain 187 596 IPR042201 -
Sto1g2015 639 MobiDBLite consensus disorder prediction 237 260 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 619 639 - -
Sto1g2015 639 ProSiteProfiles Formin homology-2 (FH2) domain profile. 187 612 IPR015425 -
Sto1g2015 639 SMART it6_source 187 601 IPR015425 -
Sto1g2015 639 PANTHER FORMIN-LIKE PROTEIN 1 8 639 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 111 135 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 1 22 - -
Sto1g2015 639 MobiDBLite consensus disorder prediction 624 639 - -
Sto1g2015 639 PANTHER FORMIN-RELATED 8 639 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2015 Sto-Chr1 28578183 28582418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2015 152 628 FH2 protein (formin) Gene Family AT3G25500 77.801 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2015 - - gmx:100802678 882.093