Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1971 ATGGGTGAGAAAACGGATGGGGGTAGTGGTATTATTAAGTCATGGGGTTCCAGTTTGAGTTTGGGACTTGGGTTGATGAATCAGACTTCTTCtgtgaaaggaaaagaaagtgtTATTCTGAAGAATCCTTCCCCACCGATTGTTCCCAATGAAAAATCCACCGGAAATAATAGTGTTTTTCACTTGCCTCCAGATGTCCGACGCGTGGCGAATCGGAGCTCCAAGACGGCGCCGTTGGTACGAGGAGCGGATGTGAAATTAGCAGCGCCGCCGCCGCCTCCTTCTTCTCCGGCGGTGAATCGCGACGACGAAAATGGCGTCTCCTCGCCGAACAGCACTGTCTCGAGCATCAGCGGGAAGCGGAGCGAACGAGAGACACCGACCGGCGACGAGAACGACGCGGAGCGGGCTTCTTTCTCTCTCGGGAGCGACGACGAggacggcggcggcggcggtgacGGAGTCGGAGATGGAGACGGCAGcgccggcggcggcggcgaAACCTCGAGGAAGAAGCTCCGGCTGTCGAAGGAGCAGTCATTGGTGCTGGAGGAAACGTTCAAGGAGCATCACACACTCAGTACGGTGAGTAGTAGCAGTGGCATTTCTGTGAATTCCTGGATGCCTAAGGCAACAAAAGCAGGCATTGGCAACACAGCTGAATCTGAGGGCAAGGCAGGTGGAAGTGTGGTTTCAAAACCGAAGGGCAAGGTGAGGACCAAactgaagaaaaatgaaatggaTTTTGAGTACTTGAAGAGATGCTGTGAGCTTCTTACTATAGAGAACAGGAGGTTGCAAAAGGAAGTGCAAGAGCTGAGGGCATTGAAACTATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCGTGCGAGCGCGTTGCCGTTTCGTCTACATCCCCCTCGACCTCGCTAGCTATCGGTGGCCCCTCCATGGCTGCTCCTCCTAATCGCCCCGCCGCGTCAGGCCATACCATCCACCGGCCTGTGCCTATCAACGCTTGGGCAACAAAATCGGGTCATACTGGACCGTTTGACAGCTCAATTTCCCGGCCTTAA 1080 0.5009 MGEKTDGGSGIIKSWGSSLSLGLGLMNQTSSVKGKESVILKNPSPPIVPNEKSTGNNSVFHLPPDVRRVANRSSKTAPLVRGADVKLAAPPPPPSSPAVNRDDENGVSSPNSTVSSISGKRSERETPTGDENDAERASFSLGSDDEDGGGGGDGVGDGDGSAGGGGETSRKKLRLSKEQSLVLEETFKEHHTLSTVSSSSGISVNSWMPKATKAGIGNTAESEGKAGGSVVSKPKGKVRTKLKKNEMDFEYLKRCCELLTIENRRLQKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERVAVSSTSPSTSLAIGGPSMAAPPNRPAASGHTIHRPVPINAWATKSGHTGPFDSSISRP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1971 359 Coils Coil 256 276 - -
Sto1g1971 359 MobiDBLite consensus disorder prediction 42 175 - -
Sto1g1971 359 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 15 194 - -
Sto1g1971 359 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 237 347 - -
Sto1g1971 359 MobiDBLite consensus disorder prediction 123 142 - -
Sto1g1971 359 MobiDBLite consensus disorder prediction 340 359 - -
Sto1g1971 359 PANTHER - 237 347 - -
Sto1g1971 359 PANTHER - 15 194 - -
Sto1g1971 359 Pfam HD-ZIP protein N terminus 16 125 IPR006712 GO:0005634
Sto1g1971 359 SMART halz 243 286 IPR003106 GO:0006355|GO:0043565
Sto1g1971 359 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1971 Sto-Chr1 28162270 28164273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1971 72 300 Homeobox Transcription Factor Family AT3G60390 51.240 4.14e-61 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1971 K09338 - gmx:100798480 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1971 1 28162270 28164273 Sto1g1971 1 28162270 28164273 ECH