Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1956 ATGGATGAGAAATCAGCTGCACTTGATGCTATTATAAAGGAAGCTATTGATCTGGAAAACATTCCTATTGAGGAAGTTTTTGAACATCTAAAATGTACAAAAGAAGGTTTGAGCTCTGAGCAAGTAAAGGAGAGGCTGGACTTGTTTGGATATAATAAGcttgaagaaaagaagGAAAGTAAGTTATTGaagtttttggggtttatgtgGAATCCTCTGTCTTGGGTGATGGAAGCTGCTGCTCTCATGGCCATTGCAATGGCACATGGAGggGGTGAACAAGGAGATTATCAAGATTTTGCAGGAATTATTATATTGCTTCTCATAAACTCTACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCAGCTCAAGCCCTTATGGCTCGTTTGGCTCCAAAAGCAAAGGTACTTCGTGATGGAAAATGGAATGAAGAAGAAGCTTCAGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTAGGTGACATTATTCCTGCAGATGCACGTCTCCTTCAAGGAGACCCTTTAAAGATTGACCAGtcAGCTCTTACTGGAGAATCACTTCCAGTGACAAAAAATCCAGGAGAAGGAGTATACTCTGGCTCAACTTGCAAGCAAGGAGAAATAGAAGCTGTAGTTATTGCAACTGGGGTCCACACTTTCTTTGGCAAAGCTGCTCATCTTGTTGAAAACACCACACATATTGGCCATTTCCAGAAGGTTCTTAATTACACAAAAACAATacattttataGTTCTGACATCCATTGGAAACTTTTGCATATGTTCGATTGCTGTCGGGATGTTTATCGAAATCATTGTGATATACGGAATTTATAAAAGGGCATACCGCGTTGGTATCGACAACCTTCTCGTGTTACTGATCGGTGGGATCCCTATTGCTATGCCTACTGTTCTTTCTGTAACAATGGCTATTGGTTCACACAAGTTGTCTCAACAGGGAGCCATAACTAAGAGGATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGCTATGTAGTGACAAAACCGGCACATTAACTCTTAACAAGCTTACTGTGGACAAGAATTTGATTGAGGTTTTCGCAAAAGATGTTGATAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGACAGAGAACCAGGATGCAATTGATGGAGCAATTGTTGCAATGTTGTCCGATCCAAAAGAGGCGCGAGCCGGAATAACAGAAGTTCATTTCCTTCCGTTCAATCCAACTGATAAGAGAACTGCACTTACATACCTTGATGCTGAAGGTAAGATGCACAGAGTAAGCAAAGGAGCACCAGAACAGATTCTCCATCTTGCACATAACAAACAAGAAATCGCACACAAAGTTCATGCAATTATTGACAAGTTCGCCGAACGTGGACTTAGGTCTCTCGCAGTAGCCCGCCagGAAGTACCTGGTGGAAGTAAAGAGAGTGGAGGAGGCCCTTGGGAATTTGTAGGTCTTCTTCCTTTGTTCGATCCTCCTCGCCATGATAGTGCCGAAACCATTAGAAGAGCTCTCGATCTTGGTGTCAGTGTCAAAATGATAACTGGAGATCAACTTGCAATTGGGAAGGAAACGGGAAGGCGTCTAGGAATGGGTACGAACATGTATCCTTCGTCATCTCTACTCGGCGAAAATAAATGTCAAACACTTGATACTCTCCCCATTGATGAGCTCATTGAGAATGCTGATGGATTTGCTGGAGTCTTTCCTGAGCATAAGTATGAGATTGTGAAGAGATTACAAGCTAGAAAACACATTTGTGGGATGACTGGTGATGGTGTGAATGATGCACCTGCCTTAAAGATAGCTGACATCGGTATAGCCGTAGCAGATGCCACCGATGCTGCTCGAAGCGCGTCCGACATAGTTCTGACCGAACCCGGGTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATCTTTCAGAGAATGAAAAATTACACAATATATGCTGTATCTATCACTATACGTATTGTGTTGGGCTTTATGTTGCTGACATGCTTTTGGAAATTTGACTTCCCTCCTTTCATGGTTCTTGTAATTGCAATTCTCAATGATGgcACCATTATGACAATATCCAAAGATAGAGTTAAGCCTTCTCCACTTCCAGATAGTTGGAAGCTTAGTGAAATTTTTGCCACTGGTATCGTCATTGGAGGCTACTTGGCTCTAATGACAGTCATCTTCTTCTGGGCTGCTTATGAAACTGATTTCTTCCATGACAATTTTAAAGTGGAAAATTTCAACTCAAATAAGCTTAACATGTCCAATAAATCTATCTCCACTGCACTGGATGAGAAGTTGGGATCTGCAGTGTACCTTCAAGTTAGTACAATAAGTCAAGCCCTAATCTTCGTGACTCGATCTCGGGGATGGTCCTACACCGAACGACCGGGACTTTTGCTCGTTATTGCTTTTATTATCGCCCAATTGGTTGCGACGGTTATATCCGCCACCGTCACTTGGCCATATGTTGGAATCAGAAAAATTGGTTGGGGCTGGTCAGGAGTCATTTGGTTGTACAATATTTTTACCTATATATTCCTGGATCCTATAAAATTTGCTGTCCGTTATGCATTAAGTGGAAGGGCTTGGAATTTGGTGGTAGACCAAAGGACTGCATTCACCAACAAAAACGACTTCGGTCGAGAAGTTCGTGAGGCGGCATGGGCGGCCGAGCAAAGAACCCTACATGGCCTTCAATCTGCTGAGACAAAGATGTTTGCAGAGAAGCACACATTCAGAGAAATAAACACATTAGCAGAAGAAGCTAAAAGGAGAGCCGAGATAGCAAGGATGAGAGAGCTTCACACTCTGAAAGGAAGAGTGGAATCATTTGCCAAATTAAGAGGTTTAGACATTGATGCTATCCAAGGCCATTACActgtctaa 2931 0.4152 MDEKSAALDAIIKEAIDLENIPIEEVFEHLKCTKEGLSSEQVKERLDLFGYNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIAMAHGGGEQGDYQDFAGIIILLLINSTISFIEENNAGNAAQALMARLAPKAKVLRDGKWNEEEASVLVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHIGHFQKVLNYTKTIHFIVLTSIGNFCICSIAVGMFIEIIVIYGIYKRAYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKDVDKDMVVLMAARASRTENQDAIDGAIVAMLSDPKEARAGITEVHFLPFNPTDKRTALTYLDAEGKMHRVSKGAPEQILHLAHNKQEIAHKVHAIIDKFAERGLRSLAVARQEVPGGSKESGGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKCQTLDTLPIDELIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGIVIGGYLALMTVIFFWAAYETDFFHDNFKVENFNSNKLNMSNKSISTALDEKLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVIAFIIAQLVATVISATVTWPYVGIRKIGWGWSGVIWLYNIFTYIFLDPIKFAVRYALSGRAWNLVVDQRTAFTNKNDFGREVREAAWAAEQRTLHGLQSAETKMFAEKHTFREINTLAEEAKRRAEIARMRELHTLKGRVESFAKLRGLDIDAIQGHYTV 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1956 976 Pfam E1-E2 ATPase 132 321 - -
Sto1g1956 976 SFLD p-type atpase 324 652 IPR044492 -
Sto1g1956 976 Pfam haloacid dehalogenase-like hydrolase 338 615 - -
Sto1g1956 976 PRINTS H+-transporting ATPase (proton pump) signature 458 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 PRINTS H+-transporting ATPase (proton pump) signature 573 589 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 PRINTS H+-transporting ATPase (proton pump) signature 601 617 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 PRINTS H+-transporting ATPase (proton pump) signature 632 657 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 PRINTS H+-transporting ATPase (proton pump) signature 786 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 Gene3D - 96 839 - -
Sto1g1956 976 Gene3D - 925 976 - -
Sto1g1956 976 Gene3D - 354 501 IPR023299 GO:0000166
Sto1g1956 976 Gene3D - 339 638 IPR023214 -
Sto1g1956 976 ProSitePatterns E1-E2 ATPases phosphorylation site. 344 350 IPR018303 -
Sto1g1956 976 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 873 IPR023298 -
Sto1g1956 976 PANTHER CALCIUM-TRANSPORTING ATPASE 4 956 - -
Sto1g1956 976 SFLD C1.7: P-type atpase like 324 652 - -
Sto1g1956 976 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Sto1g1956 976 PANTHER PLASMA MEMBRANE ATPASE 4 956 - -
Sto1g1956 976 Gene3D - 134 218 - -
Sto1g1956 976 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 831 IPR006534 GO:0008553|GO:0016021|GO:0120029
Sto1g1956 976 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Sto1g1956 976 CDD P-type_ATPase_H 36 867 IPR006534 GO:0008553|GO:0016021|GO:0120029
Sto1g1956 976 SUPERFAMILY HAD-like 338 648 IPR036412 -
Sto1g1956 976 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 549 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto1g1956 976 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 496 507 - -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 518 528 - -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 601 620 - -
Sto1g1956 976 PRINTS P-type cation-transporting ATPase superfamily signature 624 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1956 Sto-Chr1 27949453 27959446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1956 7 976 Primary Pumps ATPases AT3G60330 78.064 0.0 1549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1956 K01535 - rcu:8265793 1615.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1956 1 27949453 27959446 Sto1g1956 1 27949453 27959446 ECH