Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1954 ATGGAATCATCATTTCCATTATTATACCCacttgatgaccaaaataaccCTATTATTTTATGCCCTAGCTACGATAATTCTTCGCCGGAGCAGCGCGTAGGCCACCCCGGTGGCGTCGTGTTTACCGGGGACCGCCATAATGACACTGTGAAATCAAATGACAGGGTTAGTATTATTAGTAGTAATAATATAGGAGGTGTGGCGCGTGAGGTGAACGTGCCTCCTCCTCCTGGGTGGAGGAATTACCGGGGCGTGAGGCGTCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGAGAGGAGCGGTGCGAGGATATGGTTAGGGACTTATGAGAGGGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTAGGAAAGCCAAGCTCAATTTCCCACACCTCATTGATTCGACGTCGTCGTCCGATGCCCCAGTGCCGGAGCCGGAGCCAGCGAGGGTGGTGGTCGGGCAGAAGAGGCACTCGCCGGAGCATTCGTCGGAGGAAAAAGGGTGTGAAGGAGGGTCAAAGAGGAAGAATAAAAGCTTGTGTGGGCTATTGAATAAGTTGGCAAAGAATAGAGGTCAAGTCAGCCCTACCTACCACAATGCTTCGCCGGAGAAACGTGCCGGCATCGTCGGCAACTACCCCGTGTTTCCCGGAGGGCACGATGACGTCGTCACGAACCTCACGAGTAGTGTGCCGGTGTGGCGTTACGACGACGTGATGATGAAACCAAGTGgtgataataattataattatggaGGAGGTAGGGCGCGTGAGGTGCACGCGCCTCCTCCTAGGTGGAGGAATTACCGGGGCGTGAGGCGTCGGCCGTGGGGGAAGTTCGCGGCCGAGATCCGGGACCCGAAGAGGAGGGGCGCGAGGATATGGTTGGGGACTTATGAGAGGGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAAGGTTGTAAAGCCAAGCTCAATTTTCCGCACCTCATTGGTTCATCGTCGTCCGATAATGCGCCGGTGCCGGAGCCGGGCGCCGTGAGAGTGGTTTTCGGGGAGAAGCGGCACTCGCCGGAGCCTTCATCTCCGGCGCCGGCATGGTCCAATAAGAGGAGGAAGAGCCTTCATGGTCTATTGAATAAGATGGCAAAGAATAGAGGCCAAGCCAAATgtttgaattggtattattaa 1212 0.5272 MESSFPLLYPLDDQNNPIILCPSYDNSSPEQRVGHPGGVVFTGDRHNDTVKSNDRVSIISSNNIGGVAREVNVPPPPGWRNYRGVRRRPWGKFAAEIRDPERSGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIDSTSSSDAPVPEPEPARVVVGQKRHSPEHSSEEKGCEGGSKRKNKSLCGLLNKLAKNRGQVSPTYHNASPEKRAGIVGNYPVFPGGHDDVVTNLTSSVPVWRYDDVMMKPSGDNNYNYGGGRAREVHAPPPRWRNYRGVRRRPWGKFAAEIRDPKRRGARIWLGTYEREEDAALAYDRAAFKMKGCKAKLNFPHLIGSSSSDNAPVPEPGAVRVVFGEKRHSPEPSSPAPAWSNKRRKSLHGLLNKMAKNRGQAKCLNWYY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1954 403 MobiDBLite consensus disorder prediction 163 183 - -
Sto1g1954 403 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 SMART rav1_2 277 341 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Sto1g1954 403 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Sto1g1954 403 PANTHER DNA-BINDING DOMAIN 66 201 IPR044808 GO:0003700|GO:0009873
Sto1g1954 403 PANTHER DNA-BINDING DOMAIN 257 395 IPR044808 GO:0003700|GO:0009873
Sto1g1954 403 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 MobiDBLite consensus disorder prediction 163 184 - -
Sto1g1954 403 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 66 201 - -
Sto1g1954 403 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 257 395 - -
Sto1g1954 403 SUPERFAMILY DNA-binding domain 277 336 IPR016177 GO:0003677
Sto1g1954 403 Pfam AP2 domain 277 327 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Sto1g1954 403 CDD AP2 277 337 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Sto1g1954 403 ProSiteProfiles AP2/ERF domain profile. 277 335 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1954 Sto-Chr1 27921759 27932020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1954 264 381 AP2-EREBP Transcription Factor Family AT2G44840 58.475 1.07e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sto1g1954 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1954 K09286 - gmx:548037 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1954 1 27921759 27932020 Sto1g1954 1 27921759 27932020 ECH