Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1952 ATGTGTGAAGCTTCAAAGAAATACATACCCGCCGCAAGAGTTTCCCAGCAAGCAATCCGGCAATACCTTCTCGGCGACGAAGACGATGACGACGTCGGAACATTCGAGTtgccggcggcggcggcggctaCACTTCCCGATGACATCGGCCCGAGTCCAACTGCAACAAAtaatgatcatcatcatcatcatcattatgatAGTAATTATTACAGAGATGAAGTCCCAGAAGCtgattattcttattattattgcaccaataatagtaataataataataattactattattCAGGTGGGTCCTCATCGTCCACGTGGGATTTCACTAGACAAATGATGATCCAAACGGGGGCGGCGCGTGAGAGTAACGCTAACGCACCGAGGGTGGAGCGGCGCTACCGGGGCGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATAAGGGATCCAGCGAAGAATGGCGCTAGAGTTTGGCTTGGGACTTATGAGTTGGCTGAGGACGCGGCTCTGGCTTATGACCAAGCGGCTTATAGGATTCGCGGAGCCAAAGCCAAGCTGAACTTTCCTTCTCTCGTCGGCTCGGATAGGTGGGAGCTATTTCGAGTGGCTCGCGAGTGCGGCCACAGCCACAAGCATTAA 642 0.4611 MCEASKKYIPAARVSQQAIRQYLLGDEDDDDVGTFELPAAAAATLPDDIGPSPTATNNDHHHHHHYDSNYYRDEVPEADYSYYYCTNNSNNNNNYYYSGGSSSSTWDFTRQMMIQTGAARESNANAPRVERRYRGVRRRPWGKYAAEIRDPAKNGARVWLGTYELAEDAALAYDQAAYRIRGAKAKLNFPSLVGSDRWELFRVARECGHSHKH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1952 213 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Sto1g1952 213 Pfam AP2 domain 132 182 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 PANTHER DNA-BINDING DOMAIN 93 195 IPR044808 GO:0003700|GO:0009873
Sto1g1952 213 SUPERFAMILY DNA-binding domain 132 191 IPR016177 GO:0003677
Sto1g1952 213 SMART rav1_2 132 196 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 PRINTS Ethylene responsive element binding protein signature 172 192 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 MobiDBLite consensus disorder prediction 44 66 - -
Sto1g1952 213 CDD AP2 140 190 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700|GO:0006355
Sto1g1952 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 93 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1952 Sto-Chr1 27905413 27906195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1952 118 203 AP2-EREBP Transcription Factor Family AT2G44840 66.667 4.92e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto1g1952 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1952 K09286 - zju:107435141 118.627