Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1924 ATGGAAGAAAAGACCAAAGCTTTAACAGAACTCATGGCAAAGTTACAGGTAGAAAATTCAGACGGAAACAAGGGAAACATAATTAAAGAGGCACCAAGAGTGCCGACTGAAGTTGCCATACTCGAGAATGGCGAGATTGAAAGAAACAGAAATATATGTGATGGGGCAGAAAAAGATTCTCCACGGGCAGCAAAGAAACAATCCGTTACAAAAAGAGTGGAaggtagagaagaaacagagGAGGAAGATGGGGGGAGGAGATCGATGCAAGTAATGGATGATACTTCGATATTAACAGAAATTCAAAGCGTAGCCGAGGAAAGCTGGATTGTGAAAGAGAATGTGGACCCCTCAATAATAACAACAGGGGTTAAAACATGGAAACGTCTTGCAAGAAATATTGgGCAAATTGGGAAAGCTGTGGATGTGGAAGAAACTATTTCAATGGTGAAGTGTTGGACAGCAGCAAAAGTTTCATACAAAGTTGAATTTGAATGGGATATTGGGAAAATGGGGATTCCAGAAGcatttcttattaaaaatgaaCATGAAATGCAATTCTTCCTTGTAAGTTTGACACTTGAAGATGTTCCAAACCAAGGCAACATTCACTTTCCTTGCAACTCTTGGGTTTTTCCGGCACATAGATACACCAAGGATCGTGTTTTCTTCGCCAACAAGCCCCCTTTCAAATCCTACCGCATCTGGACCGAGCCTGACGAGATCTGGTTCCTCCGCGGCCTCCTCGACTCCACCTACGACAGCCTCGTCTTCCCGCGAGACTTTCCCGTCTTCTACGACCGCTTCTCCCACACCGTGTCCCAACCCTACACCAAGTCTCAGCTCTCCGAGAAGCTCTGTTGCCTCTGGAAGAAGTTCCGCCTCGTCTCCTCTCGCCTCGCAGAATTCCCACCAAGAAGCAAATTAGATAAAAGAATCTATGGTGACCATTCAAGTAAAATAACTGAACAACAAATCCAGAAAAACCTAGACGGCCTCACTCTAAAacagGCATTGGCAAACAGaaaattatttgtattagaTTACCATGACGAATTCATGCCATACTTGAGGCGAATAAACAACACTTGTGCTAAGGGCTATGCTAGTAGAACAATCTTGTTCTTGAAAAGTGATGGGACTTTGAAGCCATTGGCCATTGAACTAAGTTTGCCACACCCACAAGGAGATCAATTTGGTGCATTAAGTGAAGTCTACTTGCCTTCTGAGCAAGGCATGGATAGTTCTATTTGGAAATTGGCCAAAGCTTATGTGGTTGTAAATGACTCAAGCTATCATCAACTTATTAGCCATtgGTTGAATACTCATGCAGTGATTGAGCCTTTTGTTATTGCgacacatagacaactaagtgtACTTCATCCTATTAATAAGCTTCTTGTCCCTCACTTTCGTGATACTATGAAGATCAATGCACTTGCTCGAGACAGCCTAGTCAATGAAGGTGGCACTATAGAGTCAACATTTTTTCCAGGAAAGTATGCTATGGAGCTTTCATCTGTGATCTACAAGAACTGGGTTTTCCCTGAGCAAGCACTACCCGTGGATCTTCTCAAGAGAGGAATGGCAATTGAGGATCCAACTTCTCCTATTGGCATTCGTCTTGTGATAGAAGATTACCCTTATGCAGTAGATGGACTAGAGATATGGTTTGCCATCAAGAAATGGGTGGAAGATTATTGCTCCATTTACTATAAAGAAGATTATAGTATCCAAAAAGACTATGAACTCCAAAATTGGTGGAAAGAACTGGTTGAGGTGGGTCATGGAGACATGAAACATGAGCCATGGTGGCCTAAGATGCAAACTCGCAAGGAGTTGATAGAAAGTTGCACCATCATCATATGGATTGCTTCAGCCCTGCATGCAGCAGTTAATTTTGGACAATACTCATATGCAGGTTTCATTCTGAATCGTCCAACACTTAGCAGAAAACACATGCCTGAAAAGGGTACTTTAGACTATTATGAGCTTCAAACAAACTTTGAGAAAGCTTTCTTGAGAACCATTACATCAAAGAAACAAACTCTCAAGGCCCTTGTGGTTATAGAAATCTTAGCAGAGCATTCTTATGATGAATTATACATTGGGCAAAGAGACAACCCTAATTGGACATGTGACAGAGAGTGTTTGGAGGCATTTGAGAATTTTGGGAAAAGGCTGAAGCAAATTGAGAATAATATCAAAAGAAGGAACTCTGATGGGAGACTCAAGAATAGATATGGTCCAGTTCAAATGCACTACACATTGCTTTCTCCTTATAGTGAACCTGGAATAACTGCTTTAGCAAATGCTTCCACAATCCTTTGCTGGGACTCCAGAATCATCTCAGTTGCGCTACACTCACCCCCGTCGGAATCCGAATCCGAAACCCTCCTCCGTCGGAAACCCCGCCGACGAGTCCGTTCCGGCTTGACGGGCTCGGGTCCCTTCTCCATGGAATCCATGCGCTTGAAATGGACCCAAGAGGAATTGAATCTCGCGACAGGCAACGACCGAGCGCGCTGGATCTCGGTGCGGTACCGCTTCCTTAGCTTCTCCATCTTGTGGCGGCACTGCACGGCGGTCTTCGGCGGAGACGCGTTCGGGCACCGGCTCGTGACCACATCGGCTACCTCCTGCCAGTGCGTCGCCTTCAAATTACCCCGTCCGAGGGAGTACCACTTGTCGCGGTACGCGTCGATGAGCGCGATGGTCTCGTCGTGGGACCAGCACGGCGGAGGAAGGCGGCGCGAGGACGGCGCTGGGAGAGGCAACGCCGTGAGGGGAACCGGAGGCGGCGTGGATTCGATCGGCGAAGAAGGGGAAGCCATGGAGAATTCAGAGAGAGACAGAAAAAACAACAGAGAACAGAAGAATCACACAGCGCGAGGGGAAGAAGGGTCAAATCAATTAGGGGTGTTTGGTGTGAGTGAGGGGACAAGAGGAAGTGGTAGTTTTATTGGGAGTGGATGA 2976 0.4469 MEEKTKALTELMAKLQVENSDGNKGNIIKEAPRVPTEVAILENGEIERNRNICDGAEKDSPRAAKKQSVTKRVEGREETEEEDGGRRSMQVMDDTSILTEIQSVAEESWIVKENVDPSIITTGVKTWKRLARNIGQIGKAVDVEETISMVKCWTAAKVSYKVEFEWDIGKMGIPEAFLIKNEHEMQFFLVSLTLEDVPNQGNIHFPCNSWVFPAHRYTKDRVFFANKPPFKSYRIWTEPDEIWFLRGLLDSTYDSLVFPRDFPVFYDRFSHTVSQPYTKSQLSEKLCCLWKKFRLVSSRLAEFPPRSKLDKRIYGDHSSKITEQQIQKNLDGLTLKQALANRKLFVLDYHDEFMPYLRRINNTCAKGYASRTILFLKSDGTLKPLAIELSLPHPQGDQFGALSEVYLPSEQGMDSSIWKLAKAYVVVNDSSYHQLISHWLNTHAVIEPFVIATHRQLSVLHPINKLLVPHFRDTMKINALARDSLVNEGGTIESTFFPGKYAMELSSVIYKNWVFPEQALPVDLLKRGMAIEDPTSPIGIRLVIEDYPYAVDGLEIWFAIKKWVEDYCSIYYKEDYSIQKDYELQNWWKELVEVGHGDMKHEPWWPKMQTRKELIESCTIIIWIASALHAAVNFGQYSYAGFILNRPTLSRKHMPEKGTLDYYELQTNFEKAFLRTITSKKQTLKALVVIEILAEHSYDELYIGQRDNPNWTCDRECLEAFENFGKRLKQIENNIKRRNSDGRLKNRYGPVQMHYTLLSPYSEPGITALANASTILCWDSRIISVALHSPPSESESETLLRRKPRRRVRSGLTGSGPFSMESMRLKWTQEELNLATGNDRARWISVRYRFLSFSILWRHCTAVFGGDAFGHRLVTTSATSCQCVAFKLPRPREYHLSRYASMSAMVSSWDQHGGGRRREDGAGRGNAVRGTGGGVDSIGEEGEAMENSERDRKNNREQKNHTARGEEGSNQLGVFGVSEGTRGSGSFIGSG 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1924 991 MobiDBLite consensus disorder prediction 910 991 - -
Sto1g1924 991 ProSitePatterns Lipoxygenases iron-binding region signature 1. 433 447 IPR020833 GO:0016702|GO:0046872
Sto1g1924 991 Gene3D - 430 773 - -
Sto1g1924 991 Gene3D PLAT/LH2 domain 88 228 - -
Sto1g1924 991 ProSitePatterns Lipoxygenases iron-binding region signature 2. 460 470 IPR020834 GO:0016702|GO:0046872
Sto1g1924 991 PANTHER LIPOXYGENASE 110 228 IPR000907 GO:0016702|GO:0046872
Sto1g1924 991 PANTHER LIPOXYGENASE 296 768 IPR000907 GO:0016702|GO:0046872
Sto1g1924 991 SUPERFAMILY Lipoxigenase 249 769 IPR036226 -
Sto1g1924 991 SMART LH2_4 120 226 IPR001024 GO:0005515
Sto1g1924 991 MobiDBLite consensus disorder prediction 794 815 - -
Sto1g1924 991 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 132 228 IPR036392 GO:0005515
Sto1g1924 991 Pfam PLAT/LH2 domain 156 224 IPR001024 GO:0005515
Sto1g1924 991 MobiDBLite consensus disorder prediction 943 964 - -
Sto1g1924 991 Pfam Protein of unknown function, DUF573 234 314 IPR007592 GO:0006355
Sto1g1924 991 Pfam Lipoxygenase 298 760 IPR013819 GO:0016702|GO:0046872
Sto1g1924 991 PRINTS Lipoxygenase signature 415 432 IPR013819 GO:0016702|GO:0046872
Sto1g1924 991 PRINTS Lipoxygenase signature 433 450 IPR013819 GO:0016702|GO:0046872
Sto1g1924 991 PRINTS Lipoxygenase signature 453 473 IPR013819 GO:0016702|GO:0046872
Sto1g1924 991 PANTHER LINOLEATE 9S-LIPOXYGENASE 1 296 768 - -
Sto1g1924 991 PANTHER LINOLEATE 9S-LIPOXYGENASE 1 110 228 - -
Sto1g1924 991 ProSiteProfiles PLAT domain profile. 95 225 IPR001024 GO:0005515
Sto1g1924 991 MobiDBLite consensus disorder prediction 54 88 - -
Sto1g1924 991 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 299 775 IPR013819 GO:0016702|GO:0046872
Sto1g1924 991 Gene3D - 296 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1924 Sto-Chr1 27596510 27615575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1924 295 768 Acyl Lipid Metabolism Gene Families AT3G22400 63.257 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Sto1g1924 Lipoxygenase 1.6e-226 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1924 K15718 - thj:104825976 717.998