Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1887 ATGTTCCGTCGCGCCACCTCCTTGCTGGGTCGACCCCTTCTCGCCGCCAGGTCTCGGTGCTTCTCCACCGATCTCCCCGCCGCCCCCACCGCCGATTCCAGCTTCGTCGAGGCATGGAAGAAGGTCGTTCCCAATATGGACGCTCCCAAGACTCCGCTTGCCTTCATGGTTCCTCGCCCTGCGACTCCCACTTCCCTCCCCACCAAGCTCACCGTCAATTTCGTCCTTCCTTACGCCTCCGAGTTGTCCGGGAAAGAGTCCACTTTCATGCCCGCTCAAAAGATAACAAGAGGTTTAAGAGATTGCAAATTGATAATTAAGGTTGACATGGTCATAATACCAGCAACAACAGGACAGATGGGTGTTCTTCCTGGACATGTAGCTACAATTGCAGAGTTGAAACCTGGTGTCCTATCTGTGCATGAAGGGAACGACGTGACCAAGTATTTTGTCAGTAGTGGGTTCGCTTTCATCCATGCGAACTCCGTTGCTGATATAATAGCTGTTGAAGCCGTGCCGGTTGATCAAATCGATTCTAACTTAGTCCAAAAGGGTCTTCAAGAATTCACACAGAAGCTGAACTCTGCCTCAACTGACTTGGAGAAAGCCGAAGCTCAGATTGGGGTCGATGTCCATAGTGCACTCAACTCAGCTCTTACTGGCTAA 666 0.5135 MFRRATSLLGRPLLAARSRCFSTDLPAAPTADSSFVEAWKKVVPNMDAPKTPLAFMVPRPATPTSLPTKLTVNFVLPYASELSGKESTFMPAQKITRGLRDCKLIIKVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPVDQIDSNLVQKGLQEFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1887 221 Gene3D - 60 177 IPR036771 -
Sto1g1887 221 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 107 172 IPR036771 -
Sto1g1887 221 Coils Coil 186 206 - -
Sto1g1887 221 Hamap ATP synthase epsilon chain [atpC]. 68 209 IPR001469 GO:0015986|GO:0045261|GO:0046933
Sto1g1887 221 CDD F1-ATPase_delta 107 214 IPR001469 GO:0015986|GO:0045261|GO:0046933
Sto1g1887 221 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 107 163 IPR020546 GO:0015986
Sto1g1887 221 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 1 88 - -
Sto1g1887 221 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 107 221 - -
Sto1g1887 221 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 88 IPR001469 GO:0015986|GO:0045261|GO:0046933
Sto1g1887 221 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 107 221 IPR001469 GO:0015986|GO:0045261|GO:0046933
Sto1g1887 221 Gene3D - 178 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1887 Sto-Chr1 27227253 27230833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1887 1 221 Primary Pumps ATPases AT5G47030 67.699 2.88e-105 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1887 K02134 - zju:107431463 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1887 1 27227253 27230833 Sto1g1887 1 27227253 27230833 ECH