Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1883 atGGCTTCTCCACCTCCCTTGACACTAAACGTCGTCGGATCAGACTCCTTCACTCCAATCACAACCTCCAATCAAGGTGATTCTTCATCTCAACCACACTCCTCCTTGCAGAATCTCAATCCTAGCATTCTCATTATCGTCATCGTCCTCGCCGTCACCGTcaccgtctcccttgctctctGTTTACTCCTCCGTCACCTCAATCTCCGTTGTCTCCGCCGTCTGTCTCCCTCCTCGTCGTCCAATGCGACGTCGTCGTCGTCCTCGCCGCCGGCATCTGCAACGCCTGTCTTCTCTTCCAGCCGCCGCGTCTCGCCGGAGATCCCTTCCCCTTCGATCATCGACTCGCTTCCTCTGTTCACCTTCTCGTCGATTACTCGGCGAGCCTCTGCCGCCGCCAACGGCGGCGATGGTGATTGCGCCGTTTGCCTCTCGAAGTTCGAGCAGCGTGACTTGCTCCGCCTACTCCCGCTCTGTTGCCATGCCTTCCACGCGGAATGTATTGACATCTGGCTTCAATCGAATCTCACCTGTCCGCTCTGCCGATCCGCCATTGTCGCCTCTGATTCGGACCTCTTGAAGGCTCTCCGATCGTCTTCCGCCAGCGTCGGCGGAGGCGGCGTCGGCGGAGACAGTTTCCGGCTTGAAATTGGAAACATCAGTCGCCGTGGAACCGCGCCGGATGCCGCGGGAGGAGAAGCGCGTGCGAGGTCCAGGTCGAGGTCGTACTCAGTAGGATCGTTCGAGTATTTTGTGGAGGAGGATTTCGAGGTTCCTATCAGCCATGCACACCGGAGGAGCGTGTCGGAGAACAAGGACGATACGGTGGTGGTAGAATCtcaggcggcggcggcggcgggcCAGCCGGTCCATGAGGCGAGCTTAGCCGCCGATGTAGCCGCCAGTGGAAGGAGCTGGCTGAAAGATTACGTGGATAGACTATCGTCTTCAATATCGTCCAGAACGGTGTCGTTTCGAAGCTCTGGAAGGTTCTTTAGCCACCGAAGCGACACTTTCTCAGCGGAGGACTATGACGTGGAAGCGAACAGAATAGGAGAGGAAATCAGCGAAATTTTTCGATGGCTCTCAGGGGTATGA 1098 0.5455 MASPPPLTLNVVGSDSFTPITTSNQGDSSSQPHSSLQNLNPSILIIVIVLAVTVTVSLALCLLLRHLNLRCLRRLSPSSSSNATSSSSSPPASATPVFSSSRRVSPEIPSPSIIDSLPLFTFSSITRRASAAANGGDGDCAVCLSKFEQRDLLRLLPLCCHAFHAECIDIWLQSNLTCPLCRSAIVASDSDLLKALRSSSASVGGGGVGGDSFRLEIGNISRRGTAPDAAGGEARARSRSRSYSVGSFEYFVEEDFEVPISHAHRRSVSENKDDTVVVESQAAAAAGQPVHEASLAADVAASGRSWLKDYVDRLSSSISSRTVSFRSSGRFFSHRSDTFSAEDYDVEANRIGEEISEIFRWLSGV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1883 365 MobiDBLite consensus disorder prediction 79 108 - -
Sto1g1883 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 191 IPR013083 -
Sto1g1883 365 Pfam Ring finger domain 139 182 IPR001841 -
Sto1g1883 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 3 340 - -
Sto1g1883 365 SUPERFAMILY RING/U-box 139 187 - -
Sto1g1883 365 SMART ring_2 140 181 IPR001841 -
Sto1g1883 365 MobiDBLite consensus disorder prediction 79 107 - -
Sto1g1883 365 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Sto1g1883 365 CDD RING-H2_PA-TM-RING 139 182 - -
Sto1g1883 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1883 Sto-Chr1 27205043 27206140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1883 38 193 C3H Transcription Factor Family AT4G28890 35.849 2.28e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1883 K10663 - gmx:100776516 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1883 1 27205043 27206140 Sto1g1883 1 27205043 27206140 ECH