Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1870 ATGCCTCCAAAGAAGAAGCCGAAGAAGCCcagttcttcttcttcttcttcttcttcctcctccaagAAGTCAAATCCGAACAACCAAGCTCAGCCTTCCAAGTTCGGCATCCAGCATTTCTTCGAGCGCCATACCCAGAATGCTCTTCTGGCCTCTCAGAAGCAACCAAAGAATGATGCAACTGCTAAAACTTCCAATTCTGCCCCTCAAGATTCCAAATCCGTTGCATCACCCACCTCTCGGAATGTTCCATGTGCTACTGGGTCGGACGCCGTTGCTTCAAAAAAGTCAGATTCCGTTCTTCCCAAAGCTGAAAGTGATTTGAACCCAAAGTCGGATGCCGTTGCTCCAAAAAAGTTAGGTTCTGCTCTTCCCAAAGCTGAAAATGATTTGAAATCAAAGGGGGATTCGGAGTTGCAAAATCCGAAAGACTGCGCGCCATTACCCGCAAATGAAGCTAATTTCTCGTCACAGAATACGCCTTCAGAGAATTTGGCAATACCTGGGTTTAATGCTGCGGAGAATCTCACCGATGTGTCTCCAGAAATATCTAAGACTGTGGCCCATAAGCGCTTTAAGTTTTCGCCTGGGATGTTTATAAAGCAAAGCCAGGACGAAGGGATTGATGAGGTTACGTGGAAGATATCCCCAGTGAATGAAAGACTCCAAGCAGTTTCAAAACACACACCTCAGATAATTCAAGCGTTGGCTGACTCTTCTAAGATCAACTTGTTGCCCATCGCAAACTCCTCCGAGGATAAGGCAAAATTTGAAAAGTTGCTTGCATCACCTATTCCCAAGGTTGCTGAAAGATCAATAGTGTCGAAGAATAAAAGAGGCTTGAAAAGGATAAATCCAGACCAAGATATGGGTTTTAATGTTAATGCAACTAATATGAGTAGCTCTGGAGTAACGCGTGAACAGAGTCCTTTCAGAACTCCTCCATCTTTATCTTTTTGCCCTGATAAGATGCAACTTGTCAGGGATGTTGAGCACAATGGATCATCTGACCAGTTTTATTTAAGACAACATAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTTGTGTTGAAGATGCTACAATTTGTAATAAAAGCACCCATTTCTTTAAATCTCAAGATGGAATTACTGATAGTTTGCCGGTCAAAGTGGACCATGCAGTAGAAAGGACAATGTCTCATACACCAAAAGAGGTTATTGGTGTTTCCAATTCTAATTACCTGGTATTGGAGGTGTCTGAAAAGCGTAGGTCTGCTGATTCATCTGCTGTTCAATGCCCGTACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGGGCTGCAAACTTGTGGGAAGAGTGGTCTTACAGTGTTATTGCACCTGGAGATACTGTGAATATAATTGGTCAATTTGATGAACAGGGAAACTGTGATGTAGAccatgataataattttttgattgTACACCCAAATATTCTGGTTTCTGGAACTCGGGTTGCTGGTAGTTTTAGTTGTCCAAGGAGAACTGTCTTAGACGAGAGGCTAAAATACAATGAGCACTCAATCGCAGCATTAACTGGAACTTTGCTTCACCAAATCTTTCAGGCTGGACTTATGAAGGATTGTCCTACAATAAACTTCTTAGAAGAATATGCTCGAGTGGTACTACAAAGAAACATTGAAAGTTTGTATGCATGTGGAGGAgaattaatttatttctcttCAAGTATTTCAGTAAATGAGAATGATGTTCAGAAAACCTTGATTGATGCAATCCCAAGACTTTTGAACTGGATCAAGCTGTTCAAGAAGTCAGAGgaaaaaaagaaagacgCTTATGTTGATTTTGGATCTGATGATGGGGTAATTGATATTGAGGAGATGGCATGGGCTCCAAAATATGGTTTAAAAGGAATGATTGATGCTTCTCTCAGCGTGAAAGTTCaaccaaataaaaatgaagcGGATGAGAAGATCATGCCATTAGAATTCAAAACTGGGAAATCAACTTATAGCCAGGCAAGATTCTGGTCCTTAGTACTAATATCTACTATAAAAGGACAGTCATCTGTAGAGCACCGTGCCCAAGTAATCTTATACACTCTTCTGATGTCTGAAAGGTATCAGAAGAATATAAATTCTGGTCTTCTATATTATCTCCAGTCAGATCAGACAGAGGGCATTGTGGTTCGAAGATCTGACTTAGTTGGGCTAATCATGCGACGTAATGAGCTTGCAAGTGATATTCTTAAGGCATTGACTATGCAACAACTGCCTCCAATAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCATAAGCAGATTGTTGTGGAAACTGGACACAAGTTTTAAAATGGAATTTTTGATGAGTGGCATTGTGGCAGGTATTATTACAAGTGCTATTGGAACTGTCATTATCAGACTATCTATTGGAGTCAGGATTGAGGTACATGGGGGAAGCACAGAGAGTAGTGGATTGGGAGATGCGTTTGATTCTCATACTAATCACCTAACACCTGTTCATTCGAAGTTCCTCTGCCATTGGGATCGACTGATTGACCTAGAAGCTAAAGAGACTGAGCTTGTAAAGAAAGAGATGTGGCGATCACTTACTTCTAAGAGACAGAACTGTGGTGGTCTTTCTTCTATTGTTCTTGATGCTTCAGATAGGATTCCATGCCAGAAATCTCCCAAAGATAACCGTTTCGTTTATCGTTTTGTACGACATGATCCATCTTCTCTCTCTGAAGTGTCAAATGGTGATCCTTCTGTCGAGTCATCAAATTATTTAGATCTCACACTTAGAAGTGGAGACTACGTGATATTGAGCACTGAATCTAGCTGTCAAACTATTGCGAGTGGGGTGATTACTGATATTAGTCACACCCATATTTCTGTTTCCTTTTCAAAGCGCTTGCGGATTCCTGGGAGTACTTCCACCACACGGGATCTTCTTCAACAGTTTTGGAGAATTAACAAGGATGAAAGTGTGACTTCATTTGCCATTATGAGGTTTAATCTTGTACAACTATTTCTACAAAATGATCAAAGTACTCATCTACGGAGGATGATTGTTGATCTTGAGGCTCCTAAATTTGACAGTGGTTCTATGCTCAGCCAGGATCCGGCAATATCGTATGTGTGGTCAGAGAAAAATTTGAATGATGATCAACGGAGAGCAATTCTCAAGATACTTACTGCAAAGGATTACACACTTATTCTAGGGATGCCAGGAACAGGGAAGACATCCACCATGGTTCATGCTGTGAAAGCCTTATTAATTAGAGGAACATCTATTTTGCTGACAGCCTATACAAATTCTGCTGTTGATAATTTACTTATCAAATTAAAAGCTCAGggcATTGATTTTGTACGTATTGGAAGACACGAAGCTGTGCATGAGGAGGTTAGAGGACACTGTATTTCAGCGACGAATGTACAAAATGTTGAAGAGATTAAAATAAGGTTAGAACAAGTTAAAGTTGTTGCGGTTACATGTCTGGGCATCACCAGTCCCTTGCTTGCCAACAGGACATTTGATGTATGCATTATGGACGAAGCTGGACAGACAACTTTACCAGTGTCCCTGGGCCCTCTCATATTTTCTTCAATGTTTGTACTTGTTGGGGATCATTATCAACTACCTCCACTTGTCCAGAGTACAGAGGCTCGAGAGAATGGCATGGGTATAAGTTTGTTTTGTAGGCTCTCTGAAGCTCATCCACAAGCAATTTCAGCATTACAGAGTCAGTACCGCATGTGCCAGAGCATTATGGACCTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGCGGTTCCTCTGAGATAGCTAATGCAAAGCTTGAGTTTGTAAGCTTACAATGTGGCTTGCCTTGGCTTAAAAATGTTTTGAATCCAGGAAGGCCAGTGATCTTTATTAATACTGATAAGCTGCCTGCTTTAGAGGCGCGAgaacaaaaaaatgtaaataaccCTGTGGAAGCTCACATAATAGCAGAGATTGCAAAGGAATTGATAAAAAATGGAATTGGAGGAGAACAGATTGGCATTATTACTCCCTATAATTCTCAGGCAAACCTCATACGGCATGCTGCTTGCATGACATCGTTGGAGATACATACCATTGACAAATACCAGGGCAGAGATAAGGACTGCATATTAGTGTCTTTTGTGAGGTCTAGTGAAAATCCATCAAGCTGTGCTTCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTCACTCGTGGCAAGAAAAAACTGATAATGGTGGGTTCTTGTAGAACTCTATCAAAGGTTCCACTGCTAAAGCTTCTGATCAAGAAGGTTGAGGAGCAATCAGGAATTTTGAGTTTCTCCAAGAAGGATATCTATCAACAAGGAGAGCTAAAAAGATGTTCCCATATGAGATGA 4440 0.4002 MPPKKKPKKPSSSSSSSSSSSKKSNPNNQAQPSKFGIQHFFERHTQNALLASQKQPKNDATAKTSNSAPQDSKSVASPTSRNVPCATGSDAVASKKSDSVLPKAESDLNPKSDAVAPKKLGSALPKAENDLKSKGDSELQNPKDCAPLPANEANFSSQNTPSENLAIPGFNAAENLTDVSPEISKTVAHKRFKFSPGMFIKQSQDEGIDEVTWKISPVNERLQAVSKHTPQIIQALADSSKINLLPIANSSEDKAKFEKLLASPIPKVAERSIVSKNKRGLKRINPDQDMGFNVNATNMSSSGVTREQSPFRTPPSLSFCPDKMQLVRDVEHNGSSDQFYLRQHKKALLELLDQVEDAICVEDATICNKSTHFFKSQDGITDSLPVKVDHAVERTMSHTPKEVIGVSNSNYLVLEVSEKRRSADSSAVQCPYKVLRLLNEQTGEERAANLWEEWSYSVIAPGDTVNIIGQFDEQGNCDVDHDNNFLIVHPNILVSGTRVAGSFSCPRRTVLDERLKYNEHSIAALTGTLLHQIFQAGLMKDCPTINFLEEYARVVLQRNIESLYACGGELIYFSSSISVNENDVQKTLIDAIPRLLNWIKLFKKSEEKKKDAYVDFGSDDGVIDIEEMAWAPKYGLKGMIDASLSVKVQPNKNEADEKIMPLEFKTGKSTYSQARFWSLVLISTIKGQSSVEHRAQVILYTLLMSERYQKNINSGLLYYLQSDQTEGIVVRRSDLVGLIMRRNELASDILKALTMQQLPPIVLAFAEVVAILMFVAFIISRLLWKLDTSFKMEFLMSGIVAGIITSAIGTVIIRLSIGVRIEVHGGSTESSGLGDAFDSHTNHLTPVHSKFLCHWDRLIDLEAKETELVKKEMWRSLTSKRQNCGGLSSIVLDASDRIPCQKSPKDNRFVYRFVRHDPSSLSEVSNGDPSVESSNYLDLTLRSGDYVILSTESSCQTIASGVITDISHTHISVSFSKRLRIPGSTSTTRDLLQQFWRINKDESVTSFAIMRFNLVQLFLQNDQSTHLRRMIVDLEAPKFDSGSMLSQDPAISYVWSEKNLNDDQRRAILKILTAKDYTLILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVHEEVRGHCISATNVQNVEEIKIRLEQVKVVAVTCLGITSPLLANRTFDVCIMDEAGQTTLPVSLGPLIFSSMFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAISALQSQYRMCQSIMDLSNALIYGDRLRCGSSEIANAKLEFVSLQCGLPWLKNVLNPGRPVIFINTDKLPALEAREQKNVNNPVEAHIIAEIAKELIKNGIGGEQIGIITPYNSQANLIRHAACMTSLEIHTIDKYQGRDKDCILVSFVRSSENPSSCASSLLGDWHRINVALTRGKKKLIMVGSCRTLSKVPLLKLLIKKVEEQSGILSFSKKDIYQQGELKRCSHMR 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1870 1479 PANTHER DNA2/NAM7 HELICASE FAMILY 7 739 IPR045055 -
Sto1g1870 1479 PANTHER DNA2/NAM7 HELICASE FAMILY 817 1479 IPR045055 -
Sto1g1870 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1058 1445 IPR027417 -
Sto1g1870 1479 Gene3D - 1156 1257 IPR027417 -
Sto1g1870 1479 Gene3D - 989 1155 IPR027417 -
Sto1g1870 1479 Pfam AAA domain 1059 1150 IPR041677 GO:0004386
Sto1g1870 1479 Pfam AAA domain 1160 1227 IPR041677 GO:0004386
Sto1g1870 1479 MobiDBLite consensus disorder prediction 45 87 - -
Sto1g1870 1479 Pfam AAA domain 1237 1436 IPR041679 -
Sto1g1870 1479 MobiDBLite consensus disorder prediction 8 35 - -
Sto1g1870 1479 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 817 1479 - -
Sto1g1870 1479 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 7 739 - -
Sto1g1870 1479 MobiDBLite consensus disorder prediction 1 160 - -
Sto1g1870 1479 Pfam DNA replication factor Dna2 440 645 IPR014808 -
Sto1g1870 1479 Gene3D - 495 760 IPR011604 -
Sto1g1870 1479 CDD DEXXQc_DNA2 1059 1259 - -
Sto1g1870 1479 CDD SF1_C_Upf1 1260 1453 IPR041679 -
Sto1g1870 1479 Gene3D - 1258 1466 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1870 Sto-Chr1 27048599 27064615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1870 174 1201 Core DNA Replication Machinery Family AT1G08840 54.302 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1870 K10742 - qsu:111998300 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1870 1 27048599 27064615 Sto1g1870 1 27048599 27064615 ECH