Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1843 ATGGATGATGCTCACGTGACAATGCTGCTTGGAGCTGCTAAGTTACTTCACGGCAGAGGCCACCAATTAAAGGTAGGTATAATTGAATTGGCACATGAATTTCCAATTAAAGGTAGTGGATTGCAAATCAGAGAGGCAATTCAGCTGCAGCTAGATGTTCAAAGGCGACTACATGAACAGCTAGAGATGCTGAACTCAGAAATATGGGATTGTAAAGGTCTGCAAGTTTGGCGAAAGATTTGCAGTGGTTCAATGAACAAGTTCATACCATTCCTGAACTATCCTCATTCAGCTGGTGGTCGAATGATTGAGAAAAAGAGGAAGGCAGAAGCAGAACAAACGAAACTCTTCTGCGGCTGTCTCTTATCGCTAGGTTTCGCATTGAACAAAAGGAAGCTCCTTCTCTTCTCTCGCACGGCCACAACTAGGGACAAGGAGACACATCAGCAGCATAGCAGAACACCGGAAGCCATTATTGGTTTCTCTGGCCCCAAGGAATTATGTTCCAACAAGAGGCAGAGAAGTGAAAATAACATTAGTAATGGTGTTAACGAAGGAAAACACCATCCTGTGTACAGAGGCGTACGGATGAGGAATTGGGGGAAAtgggtttctgagatccgtgAGCCCAGGAAGAAGTCAAGAATATGGCTCGGGACATACCCCACGGCTGAAATGGCGGCTCGAGCTCACGACGTAGCCGCTTTAGCCATCAAGGGTCAATCGGCTCACCTCAATTTTCCCGACTTGGCTCGCCAACTCCCCCGGCCCGTCAGCTCGGCTCCCAAGGACATCCAAGCCGCCGCTGCCAAGGCCGCTGCTGCCACTATCGATGACATTGGTAAAGCATATGGTCGCCAGATAATCTGA 870 0.4724 MDDAHVTMLLGAAKLLHGRGHQLKVGIIELAHEFPIKGSGLQIREAIQLQLDVQRRLHEQLEMLNSEIWDCKGLQVWRKICSGSMNKFIPFLNYPHSAGGRMIEKKRKAEAEQTKLFCGCLLSLGFALNKRKLLLFSRTATTRDKETHQQHSRTPEAIIGFSGPKELCSNKRQRSENNISNGVNEGKHHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGQSAHLNFPDLARQLPRPVSSAPKDIQAAAAKAAAATIDDIGKAYGRQII 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1843 289 CDD AP2 192 250 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 ProSiteProfiles AP2/ERF domain profile. 191 248 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 157 275 - -
Sto1g1843 289 SMART rav1_2 191 254 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 Pfam AP2 domain 190 240 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Sto1g1843 289 SUPERFAMILY DNA-binding domain 191 249 IPR016177 GO:0003677
Sto1g1843 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 157 275 - -
Sto1g1843 289 Gene3D AP2/ERF domain 191 249 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1843 Sto-Chr1 26687309 26718360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1843 183 289 AP2-EREBP Transcription Factor Family AT2G44940 69.091 2.87e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g1843 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1843 - - gmx:100776436 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1843 1 26687309 26718360 Sto1g1843 1 26687309 26718360 ECH