Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1835 ATGGGGAGCATGAGTGAACCGGATAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACAGCTGCAGCCGCTACTGCCAAGAAGCTACCCTTCTTGCCCATTTCTGAAGACAAAAAGCTAGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACacagaaattagaaacccagaAATTAGAACATACTGCTCTTGAGAATAAATTTTCTCAACTGAAAGAACGGCAATGTTCATATGATTCCACAATACCAGTGGTCAAGAAGTCTTGGGAACAGGTAATTGATGATTTGGAGTCATGTTCTGCTCAGACGAGAGAGTCTAGCAGCAGCAGATTGGATTCGAACTTAACATTGATCGCTGGAGTTGGAAGTCCATCCACTGTTGAGGATGATTTTCTTAGTCGACTTCAGCAAACTGGTGCAACTGAAAGTTCCTCCACATATAGTGGGGACGACGAGATGGAAGAGCAGATACAAGTTACTATCGAAAAGGTTAAGAGCATTTTGCAAAATATAGTGACAGATATTAATAACCTTTGGTGTCTGAAAGATGGATTGCATACTGCAGTATTAACAAAACTTACCGGAGATGGTTTGTGCGGGCAAAAGTCCTCCCTTGATCTAAAGTTGGAAGTTAAAAGCTTGAGACTGGCATTCAGTGAGCTGCATTTAAAGCACAAGTCTTTAGCTAGTGAGTTTCAAAGCCATCAAGATGTTGATGCCAAAAATAAACTTGAGCTTAAAAGACTGAAAGGGGAACTGGAAAGCACTCTTGCAGAATTAGAAGCAAGTAATCACAAATTGGAAACTCTTAGGGCAGAGAGAGATGCAGCAAAAGGGGCTGTGTTTCCTGTCTTAAATGTTGGAACTAAGCATGTTGCCAGTGATAAGATCAGAGACAAACAAAAGGATTTGCAGGACTTGGAATCTTCATTGAAAGAGTTATTGGAACAAGGATCCTCCCGACTTGTGGAACTGAAAAATCTTCATGAAGAAAGAATAAGAATATTACAGCAATTGTGTGATTTACAGAACACAGTGAAGAACTTCAAGTGTATTACCTCATCCTGTGCATTCCAATTGGCAAGAGATCAGATAGAAAAGTCAAAATTAGAAGTTCTTGAGTATCAGACCTTATTCGAGAAACTACAGGTTGAGAAGGATAACCTTGTATGGAGGGAGAGGGAGTGGTACATAAAAAGTGATTTAGTAGATGTTTTTCAAAGATCTGTAGCAGTTTCCGATTCTAAAGCGGCTGATTTTGGGgctgaaataaagaaaaaaattgaggagAGAAATGTGATTGAAAACAAGCTGCAAGAGGCAGCAAGGGAACCAGGAAGGAAGCAAATTATTGCAGACTTTAGATCCCTGGTCTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGACAATTAAGTAAGTATAAAGAAGCAGCTTCGGACATCCATTCTCTGCGTGCAGATGTACAGTCTCTCTCTAGTATTCTTGAGAGGAAGgtAAGAGAATTTGATGCTTTATCTATTAGATCTGCTGATCAACTTGCTGAGATACAGAGGCTTCTTGCTGTGGTCCAAGATTTGAGAGAGAGCGAGCTGGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCTATTGATTCAAGGGATGTTGTGGAAGCACGGGATTCAGAATACAGAGCCTGGGCACATGTTCAAAGTTTGAAATCTGCTCTTGATGAGCACAAGTTAGAGCTTCGAGTTAAGATGGCAAATGAAGCAGAGGCTAGGTCCCAACAGAGGCTTGCTACTGCGGAAGCTGAGATAGTTGATCTTAGACGGAAACTAGACGCTTCCAAAAgCTATTTCAGGGAAAAGGGTAAACTGTCTGACGTCTTGAAGTCAAAAAATGAGGAAAACGAGGCCTACTTATCTGAAATAGAGACTACCGGACAAGCATACGATGAtatgcaaacccaaaaccaacaTCTGTTGCAGCAGATTACCGAGAGAGATGACTACAATAtcaagCTTGTTTTAGAGGGTGTGAGGGCAAGACAAAAGCAGGATTCTTTGGTCATGGAGAAGCACACCAAGGAACGAGAGATCCAGCAAGCAAATGCATCTCTTAATTTTTATGACATGAAAGCTACTAGAATAGAAGACCAGTTAAAGTTCTGTTCAGATCAGTGCCAGAGGCTTGCAGAGGATAAACTTCAAAGTTCTGCCAATTTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGCCAGAGATACTGTGGAGGAAGTGCAATCTAAAGTCCGTATTAGTCGAGTAACTTGTATGGAGTTACAAGTAGACCTTGAGAGGGAGAGGTTTTCCAGGAAAAGAATAGAGGAGGAGCTGGAGATTGCCAGGAGAAAGGTTTCAAACCTTAGGTCACAGACGGAAGGTTCCTCTGTCATTGAAAAGCTTCAACAGGAACTGGCAGAATACAGGGAAATTATCAAGTGCAGTGTCTGCCAAGAAAGGACTAAAGAGGTTGTGATTACAAAATGCTATCACCTGCTCTGCAATCCATGTATCCAGAAAGTTATTGAGAGTAGGCATCGGAAATGTCCACTGTGTACTGCAAGCTTTGGGCCTAATGACGTCAAACCCATCTATTTGTAA 2655 0.4026 MGSMSEPDRKRRHFSSLSPTAAAATAKKLPFLPISEDKKLDIVVLQYQNQKLTQKLETQKLEHTALENKFSQLKERQCSYDSTIPVVKKSWEQVIDDLESCSAQTRESSSSRLDSNLTLIAGVGSPSTVEDDFLSRLQQTGATESSSTYSGDDEMEEQIQVTIEKVKSILQNIVTDINNLWCLKDGLHTAVLTKLTGDGLCGQKSSLDLKLEVKSLRLAFSELHLKHKSLASEFQSHQDVDAKNKLELKRLKGELESTLAELEASNHKLETLRAERDAAKGAVFPVLNVGTKHVASDKIRDKQKDLQDLESSLKELLEQGSSRLVELKNLHEERIRILQQLCDLQNTVKNFKCITSSCAFQLARDQIEKSKLEVLEYQTLFEKLQVEKDNLVWREREWYIKSDLVDVFQRSVAVSDSKAADFGAEIKKKIEERNVIENKLQEAAREPGRKQIIADFRSLVSSFPEEMGSMQRQLSKYKEAASDIHSLRADVQSLSSILERKVREFDALSIRSADQLAEIQRLLAVVQDLRESELELKLILEMYRRESIDSRDVVEARDSEYRAWAHVQSLKSALDEHKLELRVKMANEAEARSQQRLATAEAEIVDLRRKLDASKSYFREKGKLSDVLKSKNEENEAYLSEIETTGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLVMEKHTKEREIQQANASLNFYDMKATRIEDQLKFCSDQCQRLAEDKLQSSANLENTQRRLLDVRRSSQQARDTVEEVQSKVRISRVTCMELQVDLERERFSRKRIEEELEIARRKVSNLRSQTEGSSVIEKLQQELAEYREIIKCSVCQERTKEVVITKCYHLLCNPCIQKVIESRHRKCPLCTASFGPNDVKPIYL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1835 884 CDD RING-HC_BRE1_like 830 870 - -
Sto1g1835 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 884 IPR013083 -
Sto1g1835 884 ProSitePatterns Zinc finger RING-type signature. 847 856 IPR017907 -
Sto1g1835 884 ProSiteProfiles Zinc finger RING-type profile. 832 871 IPR001841 -
Sto1g1835 884 SUPERFAMILY RING/U-box 826 883 - -
Sto1g1835 884 MobiDBLite consensus disorder prediction 1 15 - -
Sto1g1835 884 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 884 - -
Sto1g1835 884 Coils Coil 245 282 - -
Sto1g1835 884 Pfam Zinc finger, C3HC4 type (RING finger) 831 872 - -
Sto1g1835 884 Coils Coil 426 446 - -
Sto1g1835 884 Coils Coil 816 836 - -
Sto1g1835 884 PANTHER RING FINGER PROTEIN-RELATED 1 884 IPR013956 GO:0004842|GO:0010390
Sto1g1835 884 Coils Coil 583 617 - -
Sto1g1835 884 Coils Coil 292 319 - -
Sto1g1835 884 Coils Coil 782 809 - -
Sto1g1835 884 MobiDBLite consensus disorder prediction 1 22 - -
Sto1g1835 884 SMART ring_2 832 870 IPR001841 -
Sto1g1835 884 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1835 Sto-Chr1 26607092 26627374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1835 832 880 C3H Transcription Factor Family AT5G01960 38.776 4.46e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1835 K10696 - gmx:100790744 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1835 1 26607092 26627374 Sto1g1835 1 26607092 26627374 ECH