Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1825 ATGAGCTACCGGCAGAGGCTCCAAGTAGCGGCGAAAATTATACTCGATCATGACGCACGCGCCGACGACGCGCCGCTTAACCACGAGGAGCTTGGGCTCAAGGCGACCCTCAAACCCTACCAGCTGGAGGGAGTTTCGTGGCTTATTCGAAGATATAAACTCGGCGTCAACGTCGTCCTCGaagagaagaagaagaagcagggtAAAAATAATCAGCAAGTTAAAATGAAACTCAAAACAGATGAAGAAGAGGAAGTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCAGAGACAGTTAAATTTGCCCCCAAACTAAAAGTATTTAAATATGTTGGAGAGAAAGAACACCGGCGCAGCCTACGCATGAAAATTCATGAGCATGTGAAAGGAAAGCCATCAGCAGTCAATGACTTCTTACCTTTTGACGTGATGTTAACTACCTATGACATTGCACTGATGGATCAAGATTTTCTCGCTCAAATACCATGGAAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGACCGCTATGTCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAGAACAACCTATCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTGCTGTCTTTGGTACACTAGAACAGTTCCTTTCCACATTCAAGGACATCAGTGATCCAACATCAGGTCAAGATGCACTGAAGGTAAAGAAACAGCTTAAGGTTCTGAAAAGCATATTAGCTGCCTTTATGCTTCGTCGAACCAAATCAAAGCTTATTGAGTGTGGAAGTCTAGTGTTACCACCTCTCACAGAAATAACTGTGATGGCACCCCTGGTCAGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGTTACTTGCACTATCTTCAGGAACTTCAAATCCTCAGTCCTTGCAGAATATTGTGCTACAGCTAAGGAAAGCATGCAGCCATCCTTATCTTTTCCCAGGTATTGAGCCTGAACCTTATGAAGAGGGTGAACATTTGGTTCAGGCCAGTGGTAAACTGCTGATACTGGATCAACTTCTTCAGAAGTTACATTATTCTGGACATCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGACATTTTGCAGGACTTTATGGAATTACGAAAATATTCCTATGAACGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTGGTCCATCAGTTAATTCTGAAACCGTTGACAATGGAGCCTTTGTCTTCATGATCTCAACGAGAGCTGGGGGAGTTGGTTTGAATCTTGTGGCAGCTGATACTGTTATTTTCTATGAGCAAGATTGGAATCCTCAAGTGGACAAGCAGGCTTTGCAGCGAGCTCATCGGATTGGTCAAATGAACCATGTGTTGTGCATGAAGCTTGTCACAGAAAGTTCAGTAGAGGAGgTAATTATGCGGAGGGCTGAGAAGAAATTGCAGCTAAGCCTCAATGTTATAGGAGATAATATTcagaaacaagaaaatgaagaaacgTCAGGAGTTGGAACTAATGATTTGAAATCTATTATATTTGGTTTACATATGCTTGATCCTAGTGAAATAGATGAAGGAAAATTTGGGGACAttaatttttcagaaattattgctATGACTGACAAGGTGATTGAAATGCGTGATGAACAAATATCTGACAAGGATGACAGGAAATTTGTGGTAAACCCTAGAAATCTTCTGAAAGCATATGATGCTGAAAAAGGAGGTTCTGCTTCCCTTTCGCATGATCCTGGTCTTGATGAGGCTTCCTACCTCTCCTGGGTTAAAAAATTTGAGGAAGTGTCAAAATCAAGTGCTGATTCAGTCACAGAGTTGAGGAATAGAAGAATATTGGATGCAGACAAGCGTGTAAAGCTTGAGGATGCAAAGAAGAAGGCACAGGAAAAGAAGCTGTCTAAGTGGGAAGCACTTGGATACCATTCATTGAAAGTGAATGACCCTAGCAGCCCACCAGATGATGGTATTACATCAGATGCTGGATCTGTTCATTTTGTTTATGGAGATTGTACAGATCCATCAAATGTTTGTCCATCTGAACCCGCCATAATATTCAGCTGCGTTGATACCTCTGGAAACTGGGGCCACGGAGGTATGTTTGATGCACTGACCAAACTTTCTTCGAGCATTGGTGATGCATATGAACGGGCTTCAGCACATGGGGATTTACATCTTGGTGATCTACATCTTATAAGACTTGGAGATGATCCTGATGAACCAAATGGGGATGGAAGTACTCCTAAGTGGGTTGCTTTAGCTGTAGTTCAGTCTTACAATCCAAGGCGTAAAGTTCCTCGCAGTAACATCTCACTTCTCCACTTGGAAAGTTGCTTATCAAAGGCAGCATTCTCAGCCACGCAAAATTCTGAAGTTTCATTTATCTTTTGCTACAAAGCATCAATCCACATGCCTCGCATAGGTTATCAAGATGGATCAGATCGTTCTGAGTGGTACACCATAGAACGACTTCTACGAAAATATGCTTCCATTTACGGCATCAAGATATTTGTGCGTTCACAAGACGACGCAGGAGTTGCAAATGAAGGATAA 2652 0.4106 MSYRQRLQVAAKIILDHDARADDAPLNHEELGLKATLKPYQLEGVSWLIRRYKLGVNVVLEEKKKKQGKNNQQVKMKLKTDEEEEVVLCPLSVTDGWVSETVKFAPKLKVFKYVGEKEHRRSLRMKIHEHVKGKPSAVNDFLPFDVMLTTYDIALMDQDFLAQIPWKYAIIDEAQRLKNPSSVLYNVLKDRYVMPRRLLMTGTPIQNNLSELWALMYFCMPAVFGTLEQFLSTFKDISDPTSGQDALKVKKQLKVLKSILAAFMLRRTKSKLIECGSLVLPPLTEITVMAPLVSLQKKVYMSILRKELPKLLALSSGTSNPQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFMELRKYSYERLDGSIRAEERFAAIRSFSGPSVNSETVDNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCMKLVTESSVEEVIMRRAEKKLQLSLNVIGDNIQKQENEETSGVGTNDLKSIIFGLHMLDPSEIDEGKFGDINFSEIIAMTDKVIEMRDEQISDKDDRKFVVNPRNLLKAYDAEKGGSASLSHDPGLDEASYLSWVKKFEEVSKSSADSVTELRNRRILDADKRVKLEDAKKKAQEKKLSKWEALGYHSLKVNDPSSPPDDGITSDAGSVHFVYGDCTDPSNVCPSEPAIIFSCVDTSGNWGHGGMFDALTKLSSSIGDAYERASAHGDLHLGDLHLIRLGDDPDEPNGDGSTPKWVALAVVQSYNPRRKVPRSNISLLHLESCLSKAAFSATQNSEVSFIFCYKASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYGIKIFVRSQDDAGVANEG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1825 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 267 IPR027417 -
Sto1g1825 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 528 IPR027417 -
Sto1g1825 883 SUPERFAMILY Macro domain-like 697 871 IPR043472 -
Sto1g1825 883 Gene3D - 278 581 IPR027417 -
Sto1g1825 883 Pfam SNF2-related domain 84 340 IPR000330 GO:0005524|GO:0140658
Sto1g1825 883 CDD SF2_C_SNF 353 492 - -
Sto1g1825 883 Pfam Helicase conserved C-terminal domain 361 481 IPR001650 -
Sto1g1825 883 CDD Macro_Poa1p-like_SNF2 696 865 - -
Sto1g1825 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 528 IPR001650 -
Sto1g1825 883 Gene3D Leucine Aminopeptidase, subunit E, domain 1 693 872 IPR043472 -
Sto1g1825 883 Gene3D - 11 277 IPR038718 -
Sto1g1825 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 222 IPR014001 -
Sto1g1825 883 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 6 871 - -
Sto1g1825 883 SMART ultradead3 33 230 IPR014001 -
Sto1g1825 883 PANTHER HELICASE CHR10-RELATED 6 871 - -
Sto1g1825 883 SMART helicmild6 390 481 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1825 Sto-Chr1 26547193 26558908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1825 359 499 RAD5 or RAD16-like Gene Family AT5G22750 36.170 6.40e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto1g1825 SNF2_N 8.1e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1825 K20092 - gmx:100797182 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1825 1 26547193 26558908 Sto1g1825 1 26547193 26558908 ECH