Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1823 atgCTTTCTCTGGACTCTTTCCACTGTGGGCCTGGGCTTATGGTCGTTCCGAAGTCGGAGGACGTGGGCCGGCCCATGGACTTCCCGGCGTCGAGAATTGGGCTAAACCTGGGCGGGCGCACGTACTTCTCGTCGGAGGACGACTTCGTGAGCCGGCTCTACCGACGGTCCAGACCGGCCGAGGTTGGCTCGACGTCGACGCCGTCGAATTCGCCGAGGTGCCAAGCGGAAGGATGCAATGCGGATCTCTCGCACGCGAAGCACTACCACCGCCGACACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATGGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTCCATCTTCTTTCGGAGTTCGATAATGGAAAACGAAGCTGCAGGAAGAGACTGGCGGATCATAACCGTCGCAGAAGAAAAACTCAGCAGCCGAATCAAGAAATCCTCAAATCTCACCTTGATAATGTTTCGAGATCTCCACCGGATTCTGGAACTCAAGCGATGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGGATTATTTCCAGCAAAGGGCATATCAGAATCCCAAAGCTTCAAGAGGCAGCCACATCACTGGCATTTCACACATCAAAACCTACTTCTCCCATTTTGGCTAtctcccatcatcatcatcattgcaCCACAACAATTACACTGGTACTACTTTCTCCGATGATCTCTTCGATGCCGCCTTCGAGTCGGCCCTCATCCGGTACCAGAGAAACCTCGGCCTCGGCGTCACGGGCAGGCTCGACGCCGGCACGCTTTCTTCGATCATCACGCCGAGATGTGGCGTACCGGACAAAGTTATTCGTCGTGGAAACTTGCACTCCACGCAACATTATGAGTATTTTCCGGGAAAACCTAGGTGGGTCCGATCCGAGACCCCGATGACACTCACCTACGCGGTCTCGCCGGAGAATACGATCCACAATTTGAGCTCGCGGGACGTTAAAAAGGCGTTCAAGCGGGCCTTCTCGAGGTGGGCTTCGGTGATTCCGGTGAGTTTTGTGGAATCTGAGGATTACGGCTTTGCCGATATCAAAATAGGGTTTTACAATGGTGATCATGGGGATGGAGAGCCCTTCGACGGGGTACTAGGCGTGCTAGCCCATTCGTTTTCCCCGGAGAGCGGGCGGCTCCACCTGGACGCGGCCGAGACGTGGGCGGTGGACTTCCGGGTGGAGAAATCCGCGGTGGCGGTGGACCTGGAGTCGGTCGCGACGCACGAGATCGGGCATTTGTTAGGGTTGTCACATAGCTCGGTGAAAGAGGCTGTGATGTACCCTAGTTTGAAGCCAAGGGATAAAAGGGCAGAATTGAATATTGATGATATAAAGGGAGTGCAATCTCTATATGGGTCAAACCCTAATTTTAGATATGGGTCGTCATTGGAATATGATGATATGTCTGCAAATAATGGAGCTTGTAATAATAATTTGGGAGggaatttgaagaagaagatggttgGTTTCTTCATGTTTTCTCTACTAGGTCATGCCTTATTATGTGCATGTTTATAG 1563 0.5189 MLSLDSFHCGPGLMVVPKSEDVGRPMDFPASRIGLNLGGRTYFSSEDDFVSRLYRRSRPAEVGSTSTPSNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVMAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKSHLDNVSRSPPDSGTQAMSSVTVAVSPPDYFQQRAYQNPKASRGSHITGISHIKTYFSHFGYLPSSSSLHHNNYTGTTFSDDLFDAAFESALIRYQRNLGLGVTGRLDAGTLSSIITPRCGVPDKVIRRGNLHSTQHYEYFPGKPRWVRSETPMTLTYAVSPENTIHNLSSRDVKKAFKRAFSRWASVIPVSFVESEDYGFADIKIGFYNGDHGDGEPFDGVLGVLAHSFSPESGRLHLDAAETWAVDFRVEKSAVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLKPRDKRAELNIDDIKGVQSLYGSNPNFRYGSSLEYDDMSANNGACNNNLGGNLKKKMVGFFMFSLLGHALLCACL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1823 520 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Sto1g1823 520 SUPERFAMILY PGBD-like 199 281 IPR036365 -
Sto1g1823 520 CDD ZnMc_MMP 312 467 IPR033739 GO:0008237|GO:0008270
Sto1g1823 520 Pfam Putative peptidoglycan binding domain 208 270 IPR002477 -
Sto1g1823 520 Gene3D Collagenase (Catalytic Domain) 197 472 IPR024079 GO:0008237
Sto1g1823 520 PANTHER MATRIX METALLOPROTEINASE 195 491 - -
Sto1g1823 520 Pfam SBP domain 74 147 IPR004333 GO:0003677
Sto1g1823 520 ProSitePatterns Matrixins cysteine switch. 275 282 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Sto1g1823 520 SUPERFAMILY SBT domain 72 151 IPR036893 GO:0003677|GO:0005634
Sto1g1823 520 PRINTS Matrixin signature 272 285 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto1g1823 520 PRINTS Matrixin signature 335 350 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto1g1823 520 PRINTS Matrixin signature 359 387 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto1g1823 520 PRINTS Matrixin signature 420 445 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto1g1823 520 PRINTS Matrixin signature 454 467 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto1g1823 520 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Sto1g1823 520 SMART col_5 300 468 IPR006026 GO:0006508|GO:0008237|GO:0008270
Sto1g1823 520 MobiDBLite consensus disorder prediction 138 174 - -
Sto1g1823 520 Pfam Matrixin 308 467 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Sto1g1823 520 PANTHER METALLOENDOPROTEINASE 4-MMP 195 491 - -
Sto1g1823 520 MobiDBLite consensus disorder prediction 153 174 - -
Sto1g1823 520 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 299 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1823 Sto-Chr1 26501505 26514754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1823 14 121 SBP-box Gene Family AT1G02065 74.312 5.29e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto1g1823 Peptidase_M10 5e-49 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1823 - K07999 jre:109014958 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1823 1 26501505 26514754 Sto1g1823 1 26501505 26514754 ECH