Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1821 ATGGACATGTATCTTTCAGATTGCTTTCGCATCGATGACCTTCTCAACTTCCCCAACGACGACCTCAccacctcttcctcctcctccaccgATTCCCACCACCACCCGCCGACGCTCCTTCCGCCGCAAAACCCATTTCACCACCAAAACTCCCTCAATAATTACCCTTCTGCCCCTTCCGCCGATTTCACCCCCGATCTATGCCTCCCCAACGACGACGTTGCGGAGCTGGAATGGCTCTCGCAGTTCGTAGAAAACTGCTTCCACGACATTCCATCGGGGGGGAGTGAAACGACGACGCTGGTGGGGAATAATACTCCCTCCGCCCTCCGATCCGACACGTCGTTTGGCAAAGCAGCGCGCGGCAAGCGCTCGAGCCCGAAGCCGAAACCCAAAGCGGCGGAGGCGAACGGCGGGTCGTTTTTGGCGGGGGAGGGATCGGGTGTGCGCAGGTGCACCCACTGCGCGTCGGAGAAGACCCCGCAGTGGCGAACCGGGCCGCTGGGGCCCAAGACGCTGTGCAACGCGTGCGGGGTGAGGTTCAAGTCGGGTCGGCTCGTGCCCGAGTACCGACCCGCGTCGAGCCCGACTTTCGTGCTGACTCAGCACTCGAACTCGCACCGGAAGGTGATGGAGCTCCGGAGGCAGAAGGAGATGGTGATGAGGCAGCAGGAGCAGCAGCAACGACAAGGGCACCCGCATGACTATGAAGTTTGCTGA 720 0.5903 MDMYLSDCFRIDDLLNFPNDDLTTSSSSSTDSHHHPPTLLPPQNPFHHQNSLNNYPSAPSADFTPDLCLPNDDVAELEWLSQFVENCFHDIPSGGSETTTLVGNNTPSALRSDTSFGKAARGKRSSPKPKPKAAEANGGSFLAGEGSGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEMVMRQQEQQQRQGHPHDYEVC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1821 239 MobiDBLite consensus disorder prediction 22 37 - -
Sto1g1821 239 Coils Coil 210 230 - -
Sto1g1821 239 MobiDBLite consensus disorder prediction 98 142 - -
Sto1g1821 239 MobiDBLite consensus disorder prediction 98 113 - -
Sto1g1821 239 PIRSF Txn_fac_GATA_plant 108 238 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto1g1821 239 PIRSF Txn_fac_GATA_plant 2 141 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto1g1821 239 ProSitePatterns GATA-type zinc finger domain. 152 177 IPR000679 GO:0006355|GO:0043565
Sto1g1821 239 PANTHER GATA TRANSCRIPTION FACTOR 6 238 - -
Sto1g1821 239 Pfam GATA zinc finger 152 185 IPR000679 GO:0006355|GO:0043565
Sto1g1821 239 MobiDBLite consensus disorder prediction 22 57 - -
Sto1g1821 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 210 - -
Sto1g1821 239 SMART GATA_3 146 196 IPR000679 GO:0006355|GO:0043565
Sto1g1821 239 Gene3D - 148 197 IPR013088 GO:0006355|GO:0008270
Sto1g1821 239 ProSiteProfiles GATA-type zinc finger domain profile. 150 182 IPR000679 GO:0006355|GO:0043565
Sto1g1821 239 CDD ZnF_GATA 151 198 IPR000679 GO:0006355|GO:0043565
Sto1g1821 239 PANTHER GATA TRANSCRIPTION FACTOR 2 6 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1821 Sto-Chr1 26448045 26448862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1821 41 228 C2C2-Gata Transcription Factor Family AT2G45050 55.814 2.76e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto1g1821 GATA 1.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1821 - - pop:18105169 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1821 1 26448045 26448862 Sto1g1821 1 26448045 26448862 ECH