Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1802 ATGGCTCTATTCACACTTCAATTTGCCTTCTCCCATTTCCTCACTCTCCTTGCTTTCCTTTCATTCTTCCTTGTGAGCTCTTCTTCTTGCTATAACCCTAGAAAGCTCCAAGATGCGTCGAATTCCGATTGGTCTGAGACCATCGCCACCTGGTATGGAAGCCCTGACGGTGCCGGGAGCGAtgGGGGTGCTTGTGGATATGGAAATACTGTCTCCCAACCTCCATTTTCTTCATTAGTATCAGCTGGAGGCCAATCTTTGTTTGACTCTGGAAAAGGCTGTGGATCTTGCTATGAgGTGAAGTGTACGGCGAACTCGGCGTGCTCCGGGAAGGAAGTGAGAGTAGTGATCACTGATGAGTGTCCTGGCTGTGCCACCTCTCAATTTGACTTGAGTGGAACTGCTTTTGGAGCCATGGCTATTTCAGGTCAAGAGAATGCATTACGTAATGTTGGAAAATTGAACATTCAAGTGGAATGTAACTATCCAGGCATATCTATATCATTCAAAGTAGATTCTGGATCCTCCCAAAACTATTTTGCTGTTATGACTGAATATGAAGATGGAGATGGTAGCCTTGCAAAAATGGAACTCAAGGATGCTCAGACCTCATCATCATGGCTTTCCATGCAACAATCTTGGGGTGCAACTTGGAAGCTTGATTCTCCATCCAACCTCCAACCTCCTTTTTCGCTCCGGCTAACCTCGGCCCAGTCCGGCCAGACCGTCGTCGCGGACAACGTGATTCCGGCCGGGTGGCAGCCCGGTCAGACGTATCGCTCCGTCGTCAACTTTAACCCATAA 804 0.4801 MALFTLQFAFSHFLTLLAFLSFFLVSSSSCYNPRKLQDASNSDWSETIATWYGSPDGAGSDGGACGYGNTVSQPPFSSLVSAGGQSLFDSGKGCGSCYEVKCTANSACSGKEVRVVITDECPGCATSQFDLSGTAFGAMAISGQENALRNVGKLNIQVECNYPGISISFKVDSGSSQNYFAVMTEYEDGDGSLAKMELKDAQTSSSWLSMQQSWGATWKLDSPSNLQPPFSLRLTSAQSGQTVVADNVIPAGWQPGQTYRSVVNFNP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1802 267 Pfam Lytic transglycolase 81 150 IPR009009 -
Sto1g1802 267 Pfam Expansin C-terminal domain 167 250 IPR007117 -
Sto1g1802 267 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Sto1g1802 267 PRINTS Major pollen allergen Lol pI signature 102 112 IPR005795 GO:0005576|GO:0019953
Sto1g1802 267 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Sto1g1802 267 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Sto1g1802 267 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Sto1g1802 267 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Sto1g1802 267 Gene3D - 163 266 IPR036749 -
Sto1g1802 267 Gene3D - 29 161 IPR036908 -
Sto1g1802 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 261 IPR007117 -
Sto1g1802 267 SUPERFAMILY PHL pollen allergen 167 261 IPR036749 -
Sto1g1802 267 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Sto1g1802 267 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Sto1g1802 267 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Sto1g1802 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Sto1g1802 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Sto1g1802 267 PANTHER EXPANSIN-B2-RELATED 9 266 - -
Sto1g1802 267 PANTHER EXPANSIN-B3 9 266 - -
Sto1g1802 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 157 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1802 Sto-Chr1 26223664 26226547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1802 28 265 Expansin Gene Family AT1G65680 62.348 1.44e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1802 - - gmx:548090 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1802 1 26223664 26226547 Sto1g1802 1 26223664 26226547 ECH