Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1801 ATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGGAACTTCTCTAATGGCAGAGCCTTGGGGGGTCACATGAGGTCTCACATGGTGAATCTTCCGGTTCCTCCCAAACAAACAGAGGATCGTCCATTGGTTCAACTCAGCTTCGAGGCTGAATCAGCTTCATCTTCGTCCTCGTCAGAAGACgaagacgacgacgacgatgatAAGGGTCTAAGCTATGGCCTGAGAGAGAATCCGAAGAGGAGTATTCGCGTTGTGGATCCGGAATTCGCGTTCGCCGTCGTCGATTCCGCATCTGTATCTGCTGAACCGGTGAGTTCGATCTCCGACGCGACGACCGAAGAAGACGTCGCATTCTGCCTTATGATGCTTTCTAGAGACAAATGGAGGAGGCAGAAGGATCAAGACGAAGACGACGAGGacgaagaagcagaagaagaggaagacgacgatgaagaagaagaagaagacgaggaagaagaagaagaagaagaagcagagagaTCTCTGGAAGATTCCGATGAATTCTCGGAGGATCTGAAATCGTCAACGAAGACGACGCGATCGGTTCGCGGAAGATACAAATGCGAGACGTGCAAGAGAGTGTTTCGATCGTATCAAGCGCTTGGAGGTCACAGAGCGAGTCACAAGAAGATGAAAGTGCCTCCCGCTGCTGCTGCGGCGGCGGCCAATACGGCGTCGTATGAGGCGGAATTGGAGCAAGAGAAGAAAATCCACGAATGTCCGGTTTGTTTCAGAGTGTTCGCTTCGGGTCAAGCACTGGGAGGTCACAAGAGGACGCACGTGACTGGTTCGTCTTCAACCTCTGTTCGAACTTCTTCTACGAGATTCGCAGACCACAACAATTTCATAGATCTTAACCTTCCTGCTCCAATCGACGACGATGATGTAAGCCAAATCGAAAATTCTGCGGTTTCTGATGCAGAATTCCTCAATCCCAATACGCAAATCATTGATGCCCAACTAGCTTGA 990 0.4515 MEKHKCKLCFRNFSNGRALGGHMRSHMVNLPVPPKQTEDRPLVQLSFEAESASSSSSSEDEDDDDDDKGLSYGLRENPKRSIRVVDPEFAFAVVDSASVSAEPVSSISDATTEEDVAFCLMMLSRDKWRRQKDQDEDDEDEEAEEEEDDDEEEEEDEEEEEEEEAERSLEDSDEFSEDLKSSTKTTRSVRGRYKCETCKRVFRSYQALGGHRASHKKMKVPPAAAAAAANTASYEAELEQEKKIHECPVCFRVFASGQALGGHKRTHVTGSSSTSVRTSSTRFADHNNFIDLNLPAPIDDDDVSQIENSAVSDAEFLNPNTQIIDAQLA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1801 329 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Sto1g1801 329 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 99 - -
Sto1g1801 329 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 102 317 - -
Sto1g1801 329 MobiDBLite consensus disorder prediction 47 77 - -
Sto1g1801 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 220 IPR013087 -
Sto1g1801 329 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 102 317 IPR044303 GO:0006355
Sto1g1801 329 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 99 IPR044303 GO:0006355
Sto1g1801 329 ProSitePatterns Zinc finger C2H2 type domain signature. 247 267 IPR013087 -
Sto1g1801 329 Pfam C2H2-type zinc finger 192 217 - -
Sto1g1801 329 Pfam C2H2-type zinc finger 4 27 - -
Sto1g1801 329 Pfam C2H2-type zinc finger 245 267 - -
Sto1g1801 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Sto1g1801 329 Coils Coil 136 171 - -
Sto1g1801 329 MobiDBLite consensus disorder prediction 129 186 - -
Sto1g1801 329 SUPERFAMILY beta-beta-alpha zinc fingers 192 267 IPR036236 -
Sto1g1801 329 SMART c2h2final6 4 26 IPR013087 -
Sto1g1801 329 SMART c2h2final6 193 215 IPR013087 -
Sto1g1801 329 SMART c2h2final6 245 267 IPR013087 -
Sto1g1801 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 272 IPR013087 -
Sto1g1801 329 MobiDBLite consensus disorder prediction 135 172 - -
Sto1g1801 329 Gene3D Classic Zinc Finger 190 267 - -
Sto1g1801 329 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Sto1g1801 329 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1801 Sto-Chr1 26209315 26210535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1801 1 306 C2H2 Transcription Factor Family AT3G60580 41.796 6.78e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto1g1801 zf-C2H2_6 8.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1801 - - aprc:113850450 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1801 1 26209315 26210535 Sto1g1801 1 26209315 26210535 ECH
Sto6g0292 6 3309062 3310458 Sto1g1801 1 26209315 26210535 ECH