Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1800 atgGCTTTGATTAATgtggatcatcatcatcaccagcaATCAAATTTGAAGCACTTTTGTAAAATCTGCAAGAAAGGTTTTGGGTGTGGTAGAGCCTTGGGAGGCCACATGAGGGCCCACGGCATCGGCGACGAGAGCTGGCACGTCGAGgacgaggaggaggaggacgaTCAGGCGAGTGATTGGGAGGAGAGGCTCGTCAATGGACCCAATAAGCGTATGTATGCTCTAAGAACAAACCCTAATAGGCTTAAGAGTTGTAGGGTTTGTGAGAATTGTGGTAAGGAGTTTTTGTCTTGGAAGTCTTTCCTAGAACATGGCAAGTGCACGTCGGACGCCGAGTCTCCGGTGTCGTCGCCGGGGTTTGATGGTGACGGAGACGAGGATGTCAGCCGAAGAGGATGCGAAGAAGACCTCGCCAATTGTTTGATGATGTTGTCCAACGCCGCGGTTGATCCTCTCATCGGCGGCTCGGCCGAGCCCGAGGAGTCCTGCGCCTCGGCGAGCCGAGACGAGGAGAGGAGAACGAATCACATGATGAATAACTTCATAACTCCATTGTCTTATAGAGTCcccactactactactactactattaaTGTGGACAATAATAAAGCCAAAGGAGTAATTCCTAAAGGGTTATTTGAATGCAAAGCATGCAAGAAAGTCTTCAATTCCCATCAAGCATTGGGTGGTCATAGAGCCAGTCACAAAAAGGTCAAAGGTTGTTTCGCCTCGAGGCTTGACCACCCTCGCGGCGGCggcgatgatgatgatgatgtcaTCACACATGAAGAGTTCCTCCCAACGAAATCAAACTCCACCCTCCAataccatcaccaccaccaccaccacgggCCTAATTTATTAATGGCGCCCTCGTCTTCGTCGAAGAAGAAACCGAAGGTTCACGAATGCTCCATATGTCACCGGACTTTCTCGTCGGGACAAGCCTTGGGAGGACACAAGAGATGCCACTGGATCACCTCGAACGCGCCGGACACATCCGCGTTGACTACTAGGTTTCAACAGTTTCATCAAGAACACGTGAATAATCAAATTCCCAAGTtcgataataataataactcggAATTACTCGATTTGAAGCTCGATCTCAACCTTCCGGCTCGCGAGTTATCGACCGAGATTTATTTACAGCCGTGGGTAGGAGGGACAAAGGAGAAAGATGGTGATAATAGTCAATGTTACAAGAATAGTAACAACATGAATACTAATAATGCTTCAATGGTGAATGTGGAAGATGAAGCTGACAGTAAGGTGAAGTTAGCAAAACTCAGTGAGTTGAAGGACATGAATATGGGAGGGAGTTCTTCACCATGGCTTCAGGTGGGAATTGGTTCTGGTGGTACTGTGGGAGCTGAttcataa 1389 0.4312 MALINVDHHHHQQSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESWHVEDEEEEDDQASDWEERLVNGPNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDAESPVSSPGFDGDGDEDVSRRGCEEDLANCLMMLSNAAVDPLIGGSAEPEESCASASRDEERRTNHMMNNFITPLSYRVPTTTTTTINVDNNKAKGVIPKGLFECKACKKVFNSHQALGGHRASHKKVKGCFASRLDHPRGGGDDDDDVITHEEFLPTKSNSTLQYHHHHHHHGPNLLMAPSSSSKKKPKVHECSICHRTFSSGQALGGHKRCHWITSNAPDTSALTTRFQQFHQEHVNNQIPKFDNNNNSELLDLKLDLNLPARELSTEIYLQPWVGGTKEKDGDNSQCYKNSNNMNTNNASMVNVEDEADSKVKLAKLSELKDMNMGGSSSPWLQVGIGSGGTVGADS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1800 462 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Sto1g1800 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 304 326 IPR013087 -
Sto1g1800 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Sto1g1800 462 PANTHER OS02G0659100 PROTEIN 10 454 - -
Sto1g1800 462 ProSitePatterns Zinc finger C2H2 type domain signature. 306 326 IPR013087 -
Sto1g1800 462 SUPERFAMILY beta-beta-alpha zinc fingers 18 237 IPR036236 -
Sto1g1800 462 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Sto1g1800 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 116 IPR013087 -
Sto1g1800 462 MobiDBLite consensus disorder prediction 443 462 - -
Sto1g1800 462 Pfam C2H2-type zinc finger 303 328 - -
Sto1g1800 462 Pfam C2H2-type zinc finger 18 40 - -
Sto1g1800 462 Pfam C2H2-type zinc finger 215 239 - -
Sto1g1800 462 SMART c2h2final6 215 237 IPR013087 -
Sto1g1800 462 SMART c2h2final6 18 40 IPR013087 -
Sto1g1800 462 SMART c2h2final6 304 326 IPR013087 -
Sto1g1800 462 SUPERFAMILY beta-beta-alpha zinc fingers 301 327 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1800 Sto-Chr1 26200402 26201886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1800 214 419 C2H2 Transcription Factor Family AT1G02040 36.893 2.39e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1800 - - gmx:100793846 558.91