Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1753 ATGGTGATGATGAATGAGATTCAGAATAACTCTAATGATTCTTCCTCGCTTGTGACTATGAGAAGTAGACCTGAGGAATTCATCCCTAAGCCTCCACCACCTAATAGACcTCCAGAAAAGAGACAACGAGTTCCATCTGCTTACAATCGCTTCATCAaGGACGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCTGCAGCAAAGAATTGGGCCCATTTCCCACATATCCACTTCGGACTTATGCCTGATCACCAGCCCGTGAAGAAAGCTAATGTACGCCAGGAAGGAGAGGATGTTCTAACTATGAAAGATGGGTTTTTTGCTCCTGCAAATGTAGGATTTTTCATCAGTGCAATCATAGCCCAAACTGATGTTGCAGCACTTGTGTCGGTTCCTGCAACAATTATGTCCTGA 441 0.4422 MVMMNEIQNNSNDSSSLVTMRSRPEEFIPKPPPPNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEGEDVLTMKDGFFAPANVGFFISAIIAQTDVAALVSVPATIMS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1753 146 PANTHER PROTEIN YABBY 4 4 124 - -
Sto1g1753 146 Gene3D High mobility group box domain 29 86 IPR036910 -
Sto1g1753 146 SUPERFAMILY HMG-box 34 83 IPR036910 -
Sto1g1753 146 MobiDBLite consensus disorder prediction 1 21 - -
Sto1g1753 146 MobiDBLite consensus disorder prediction 1 43 - -
Sto1g1753 146 MobiDBLite consensus disorder prediction 26 40 - -
Sto1g1753 146 Pfam YABBY protein 13 89 IPR006780 GO:0007275
Sto1g1753 146 PANTHER PROTEIN YABBY 6-RELATED 4 124 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1753 Sto-Chr1 25680488 25686513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1753 12 122 C2C2-YABBY Transcription Factor Family AT2G45190 75.439 4.50e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sto1g1753 YABBY 4.8e-40 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1753 K25796 - gmx:100794423 179.489