Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1740 atgagtcttcttcttcttcttccctttcttctttcctccTATAGTGTCAATGGCTACTCATTGGAGGAAATCAAATCATGGTGTagccaaacccctaaccctcaACCATGTGAGTACTTTTTGAAAACCAAATCCATTAATAAACCCATTAAGAAAAAATCCGATTTCTTCAAAATCTCACTAGAGCTTGCCCTAGAGAGAGCTCAAAGGGGCGAATCAAACACTCTTACCCTAGGCTCCAAGTGTAGAAACCCTAAAGAAAAGGCGGCATGGTCCGATTGCCTCGAGCTCTACGAGCACACCATCAAGAAGCTCAAcaaaaccctggaccctaaaatCAACTGCACTGATACCGACACCCAGACCTGGCTCAGCACGGCTCTGACAAACCTCGAGACCTGCGTATTAGGGTTTTACGATCTCGGGGTCTCGGACTACGTGCTGCCCCTGATGTCCAACAATGTTACCAAGTTGCTCAGCAACACCTTGTCTCTCAACAAGGTTCCATTCAAAAAACCTAAATATAAAGGTGGGTTCCCGAAATGGGTCAAGCCCGGGGACCGGAAGCTGCTGCAGTCGGCTTCGGCTGCTTCTCAGGCGAATGTGGTGGTGGCGAAAGACGGCTCCGGCAAGTACACAACCTTGAAGGAGGCAGTAGATAATGCACCAAAGAGTAGCAATGGGAGGTATGTGATATATGTGAAGGCAGGAGTCTATAATGAACAAGTTGAGATCAAAGCAAATAATATCATGTTGGTGGGAGATGGTATTGGAAAAACTATAATCACAGGAAGCAAAAGTGTTGGAGGAGGATCCACAACCTTCCGTTCAGCTACTGTTGCTGCAGTTGGGGATTCATTTATTGCACAAGACATCACATTTAGAAACACAGCAGGACCAAATAATCACCAAGCTGTGGCATTTCGATCAGGCTCAGATTTATCAGTATTTTACAAATGCAGCTTCGAGGGTTATCAAGACACACTCTATGTCCACTCAGAGAGACAATTCTACAGAGAATGTGACGTTTATGGCACAGTGGACTTTATCTTTGGCAATTCAGCTACAATTTTACAAAATTGCAATCTTTACGCGAGAACCCCGCCTCAAAGAACCATCACTTTCACGGCCCAGGGCCGAACCGATTCGAATCAGAATACCGGAATCATAATTCACAATTCCAAGGTCACCGGCGCCTCGGATTTCTCATCGACGAACGTGAATTCTTACCTCGGGAGGCCGTGGAAGGAGTATTCGAGAACGGTGTACATGAAGACGTATCTGGATAGTTTGATAAATCCAGCGGGTTGGATGGAATGGAGTGGGGATTTCGCTTTGAACACATTGTATTATGCTGAGTATGCAAACACAGGACCTGGTTCTTCCACAGCAAATAGGGTTAAGTGGAAGGGTTACCATGTGATTGATGCTTCGGAGGCCTCCCAATTTACTGTGGATAGCTTTCTCAGCGGGAATTCATGGTTGCCGGCAACCGTACACCGCTTGAAAGAATCTGGAAGTTATGAGTGA 1530 0.4353 MSLLLLLPFLLSSYSVNGYSLEEIKSWCSQTPNPQPCEYFLKTKSINKPIKKKSDFFKISLELALERAQRGESNTLTLGSKCRNPKEKAAWSDCLELYEHTIKKLNKTLDPKINCTDTDTQTWLSTALTNLETCVLGFYDLGVSDYVLPLMSNNVTKLLSNTLSLNKVPFKKPKYKGGFPKWVKPGDRKLLQSASAASQANVVVAKDGSGKYTTLKEAVDNAPKSSNGRYVIYVKAGVYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAAVGDSFIAQDITFRNTAGPNNHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDVYGTVDFIFGNSATILQNCNLYARTPPQRTITFTAQGRTDSNQNTGIIIHNSKVTGASDFSSTNVNSYLGRPWKEYSRTVYMKTYLDSLINPAGWMEWSGDFALNTLYYAEYANTGPGSSTANRVKWKGYHVIDASEASQFTVDSFLSGNSWLPATVHRLKESGSYE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1740 509 ProSitePatterns Pectinesterase signature 2. 343 352 IPR033131 -
Sto1g1740 509 Pfam Pectinesterase 201 492 IPR000070 GO:0030599|GO:0042545
Sto1g1740 509 SUPERFAMILY Pectin lyase-like 195 498 IPR011050 -
Sto1g1740 509 Gene3D - 195 505 IPR012334 -
Sto1g1740 509 Pfam Plant invertase/pectin methylesterase inhibitor 23 165 IPR006501 GO:0004857
Sto1g1740 509 SMART PMEI_2 19 165 IPR006501 GO:0004857
Sto1g1740 509 CDD PMEI-like_3 26 167 - -
Sto1g1740 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 168 IPR035513 -
Sto1g1740 509 ProSitePatterns Pectinesterase signature 1. 226 245 IPR018040 -
Sto1g1740 509 PANTHER PECTINESTERASE 3 498 - -
Sto1g1740 509 PANTHER PECTINESTERASE 3 498 - -
Sto1g1740 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 168 IPR006501 GO:0004857
Sto1g1740 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 169 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1740 Sto-Chr1 25526020 25530071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1740 4 499 Carbohydrate Esterase AT2G45220 65.000 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1740 K01051 - gmx:100782892 786.563