Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1730 ATGGTAGCTTTTCGCCACTTCCTATTTCTCTTATTCGTTCCCTTCTTATATTCCTCTTACGTCTCAAGTTATTCTTTCAATGATATCAAATTATGGTGCAACCAAACTCCTAATCCTCAACCATGTGAGTATTTCTTGACCAATAACCCAAATCTTCAACTCAAAACCATCAAACACAAACATGACATTTTCAAGCTCTCATTGCAACTCGCACAAGAGAGAGCATTGAAGGGCCATGCAAATACCCTCTCATTAGCTCCCAAATGTAGGAACCCAAGTGAGAAGGCTGCATGGGCTGATTGCATTGAGCTTTACGACCAAACCATTCAAAGACTCAACAAAACCATAGATCCTAACACCAACTGCTCCCAAACTGATGCTCAGACATGGCTCAGCACTGCTCTCACCAACCTCGAGACCTGCAAAGCCGGGTTCTACGATCTCGGGGTTCAAGACTATGTCTTGCCATTGATGTCCAACAATGTTACCAAGTTGCTAAGTAACACTTTGGCTCTAAACAAGGTTCCATATCAAGAACCAAGTTATAATAAAGATGGGTTCCCGACATGGGTTAGGCCTGGTGATAGGAAGTTGTTGCAGGCGTCTTCTCCGGCTTCTCGGGCTAACGTGGTGGTGGCGAAAGACGGGTCTGGCAAGTATACTACTTTGAGTGCAGCCATAAATGGTGCACCAAAGAGTAGTAGTGGGAGGTATGTGATATATGTGAAGGCTGGAATTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACCGGAAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGCTCCGCCACAGTTGCTGTTGTAGGGGATGGATTTATTGCTCAAGGCATCACATTTAGAAATACTGCTGGTGCATCGAACCACCAAGCCGTAGCACTACGTTCTGGATCGGACCTATCAGTGTTTTACAAATGTAGCTTCGAAGGATACCAAGACACTTTGTACGTTCATTCGGAGAGACAATTCTACAGGGAATGTGACATTTATGGCACAGTGGACTTCATCTTTGGAAATGCTGCAGTGGTTTTCCAAAATTGTAACATTTTCGCGAGAAACCCTCCCAACAAAGTGAACACAATAACTGCTCAAGGTCGGACCGATCCGAATCAAAACACTGGAATTTCCATTCACAATTGTAAGGTTACTGCGGCCTCCGATTTGAAAGCAGTTCAAAGCTCTGTAAAGACGTATCTTGGAAGGCCATGGAAAGAATATTCTCGAACAGTGGTGATGAAGACTTTTCTTGACAGTTTGATAAATCAAGCTGGGTGGTTGGAATGGAGTGGTAACTTTGCATTGAATACTTTGTATTATGGAGAGTATATGAATACGGGTGCGGGTTCTTCTACAGCAAATCGGGTCAAGTGGAAAGGTTATCGTGTTATAAGCAGTGCTTCTGAAGCTTCAAAATTCACAGTTGGAAATTTCATTGCTGGAAACTCATGGCTCCCAGCTACTAGTGTGCCTTTCACCTCTGCTTTATAA 1554 0.4337 MVAFRHFLFLLFVPFLYSSYVSSYSFNDIKLWCNQTPNPQPCEYFLTNNPNLQLKTIKHKHDIFKLSLQLAQERALKGHANTLSLAPKCRNPSEKAAWADCIELYDQTIQRLNKTIDPNTNCSQTDAQTWLSTALTNLETCKAGFYDLGVQDYVLPLMSNNVTKLLSNTLALNKVPYQEPSYNKDGFPTWVRPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAAINGAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCKVTAASDLKAVQSSVKTYLGRPWKEYSRTVVMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGAGSSTANRVKWKGYRVISSASEASKFTVGNFIAGNSWLPATSVPFTSAL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1730 517 Gene3D - 204 517 IPR012334 -
Sto1g1730 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Sto1g1730 517 PANTHER PECTINESTERASE 8 516 - -
Sto1g1730 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 175 IPR006501 GO:0004857
Sto1g1730 517 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Sto1g1730 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Sto1g1730 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Sto1g1730 517 CDD PMEI-like_3 31 174 - -
Sto1g1730 517 PANTHER PECTINESTERASE 8 516 - -
Sto1g1730 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Sto1g1730 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Sto1g1730 517 SMART PMEI_2 24 172 IPR006501 GO:0004857
Sto1g1730 517 SUPERFAMILY Pectin lyase-like 203 514 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1730 Sto-Chr1 25371692 25373347 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1730 1 517 Carbohydrate Esterase AT2G45220 67.568 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1730 K01051 - gmx:100783964 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1730 1 25371692 25373347 Sto1g1730 1 25371692 25373347 ECH