Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1727 ATGGTAGCTTTTCGCCACTTCCTATTTCTCTTATTCGTTCCCTTCTTATATTCCTCTTACGTCTCAAGTTATTCTTTCAATGATATCAAATTATGGTGCAACCAAACTCCTAATCCTCAACCATTCAACAAAACCATAGATCCTAACACCAACTGCTCCCAAACTGATGCTCAGACATGGCTCAGCACTGCTCTCACCAACCTCGAGACCTGCAAAGCCGGGTTCTACGATCTCGGGGTTCAAGACTATGTCTTGCCATTGATGTCCAACAATGTTACCAAGTTGCTAAGTAACACTTTGGCTCTAAACAAGGTTCCATATCAAGAACCAAGTTATAATAAAGATGGGTTCCCGACATGGGTTAGGCCTGGTGATAGGAAGTTGTTGCAGGCGTCTTCTCCGGCTTCTCGGGCTAACGTGGTGGTGGCGAAAGACGGGTCTGGCAAGTATACTACTTTGAGTGCAGCCATAAATGGTGCACCAAAGAGTAGTAGTGGGAGGTATGTGATATATGTGAAGGCTGGAATTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACCGGAAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGCTCCGCCACAGTTGCTGTTGTAGGGGATGGATTTATTGCTCAAGGCATCACATTTAGAAATACTGCTGGTGCATCGAACCACCAAGCGGTAGCACTACGTTCTGGATCAGACCTTTCAGTGTTTTACAAATGTAGCTTCGAAGGATATCAAGACACTTTGTACGTTCATTCGGAGAGGCAATTCTATAGAGAATGTGACATTTATGGCACAGTGGACTTTATCTTTGGAAATGCTGCAGTGGTTTTTCAAAATTGTAACATTTTTGCGAGAAACCCTCCCAACAAAGTGAACACAATAACTGCTCAAGGTCGGACCGATCCGAATCAAAACACTGGAATTTCCATTCACAATTGTAAGGTTACTGCAGCCTCTGATTTGAAAGCAGTTCAGAACTCTGTAAAGACATATCTTGGAAGGCCATGGCAAGAATATTCTAGAACAGTGGTGATGAAGACTTTTCTTGACAGTTTGATAAACCAAGCTGGGTGGTTGGAATGGAGTGGGAACTTTGCGTTGAATACTTTGTATTATGGAGAGTATATGAATACGGGTGCGGGTTCTTCTACGGCAAATCGGGTCAAGTGGAAAGGTTATCGTGTTATAAGCAGTGCTTCCGAAGCTTCAAAATTCACAGTTGGAAATTTCATTGCTGGAAACTCATGGCTCCCAGCTACTAGTGTGCCTTTCACCTCTGCTTTATAA 1344 0.4315 MVAFRHFLFLLFVPFLYSSYVSSYSFNDIKLWCNQTPNPQPFNKTIDPNTNCSQTDAQTWLSTALTNLETCKAGFYDLGVQDYVLPLMSNNVTKLLSNTLALNKVPYQEPSYNKDGFPTWVRPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAAINGAPKSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCKVTAASDLKAVQNSVKTYLGRPWQEYSRTVVMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGAGSSTANRVKWKGYRVISSASEASKFTVGNFIAGNSWLPATSVPFTSAL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1727 447 Pfam Pectinesterase 139 433 IPR000070 GO:0030599|GO:0042545
Sto1g1727 447 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 105 IPR035513 -
Sto1g1727 447 SUPERFAMILY Pectin lyase-like 133 444 IPR011050 -
Sto1g1727 447 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 105 IPR006501 GO:0004857
Sto1g1727 447 PANTHER PECTINESTERASE 8 43 - -
Sto1g1727 447 PANTHER PECTINESTERASE 44 446 - -
Sto1g1727 447 Gene3D - 134 447 IPR012334 -
Sto1g1727 447 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 105 IPR035513 -
Sto1g1727 447 ProSitePatterns Pectinesterase signature 1. 164 183 IPR018040 -
Sto1g1727 447 ProSitePatterns Pectinesterase signature 2. 281 290 IPR033131 -
Sto1g1727 447 Pfam Plant invertase/pectin methylesterase inhibitor 51 102 IPR006501 GO:0004857
Sto1g1727 447 PANTHER PECTINESTERASE 8 43 - -
Sto1g1727 447 PANTHER PECTINESTERASE 44 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1727 Sto-Chr1 25342377 25344032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1727 1 51 Carbohydrate Esterase AT2G45220 40.385 4.81e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1727 K01051 - gmx:100783428 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1727 1 25342377 25344032 Sto1g1727 1 25342377 25344032 ECH