Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1709 ATGGGGCTTGAAGGAAGCATTCCAACTCAGATAGAAAAGCTTCCAAAGCTCACTTATTTGTCCTTGTTCAATAATCGACTTACAGGTGAGATACCATACTCTCTTGCAAACCTCACTCGACTTGAGTCTTTTGATATTTCAATCAATAGTATCAGGGGTGTGGTTCCAACTCATATAGGAGCAATTCGAAAGCTTACCCTGTCGAACAACATTCTCACGGGTGAATTACCAAACACTCTTGCAAATCTCACTCAACTTGAGACGTTTgatatatctaataataatattagtggTGAGGTTCCTTGTTGGTTGAGAAATTTGAACAAGCTTAGACTCCTAGGTTTGAGTGGGAACCATTTAACTGGATCCATTCCTTCGTGCTTATGTTTTATGACCTATCTCACCGATTTGCATTTGTCCTCAAATGAGTTCATTAGTGAGATGCCTTCTTCAATAGGAAATTTGACAAATTTAGAGGTATTTGATGCTTCCTATAATCGAATTAGTGGAACCATACCCTACGAAATTGGACAACTCCGTAGTCTTCAAGTTCTAGACCTCTCTCATAATATGCTAAATGCAACCATACCCTACCAAATAGGTAACCTAAAAATGTTAGCCACATTGAAATTGAGTTTCAACAATATTTCTAGTAGCATACCTCCAGAAATTGGACAACTCCCTTATCTCCAAACACTTGACATTTCACAAAACAAGCTAAGTGGAGAGATACCTTCTAGTTTGGGTAAATTACCTATACACATACACTTGGACTTGAGCTATAATAATCTCATTGGTAACATACCCAAAGTACTTGGTATGCTGAAAGATATCAATGTCTCACACAACTCTCTTAGTGGTTATGTCCCAAGAGAAGTTTATTGCTCATTTCCTCATAGCATATTACAAGGTAATAAAAAACTACTTGGTCTACAGAAGGGTCTTTCTTGTTCTTACCATTCCACTAGTCCTGCTAAAAAGGCAAAGCGTTACTTAAGGATCATCCTTCCTTTGACAATTTTCCTTGGCTTCCTTTTTATTGGAGCTTTGATATTTACTCGATATCTGCACAAGAAAAAAAAGCCAAAGAGAATAGTACAAAGAAATGGAGACATATTCTCAGTTTGGAATTATGATGGTAAAATCGCATTTGAAGACATCATTAGAGTTACAGAAGACTTTGATATCAAGTATTGTATTGGAACTGGTGCCTATGGAAGTGTCTATAAGGCATCACTTCCTAGTGGTCGAATTGTTGCATTGAAAAAGCTTCATAGAACTGAAGCTCAAGATCCATCATTTTCCAAGAGCTTCCACAATGAGGTCAAGATGTTGACTGAAATCCGACATCGCAACATCGTGGAACTTCATGGTTTTTGTTTGCACAACAGATGCATGTTTCTCATTTATGAGTACATGGAAAGAGGAAGCCTTTCCTATGTTTTGAGCAAAGATGTTGAAGCTGAAGAATTGAATTGGAACAAGAGGGTGAATGCCATTAAAGGAATAGCAAATGCCTTGTCTTACATGCATGATTGTAAGCCATCAATAATTCATCGAGACATAACAAGTAGCAACATATTGTTGAACTCAAGCATGGAAGCTTTTGTCTCAGACTTTGGCACAGCTCGAATCCTTGATCCAGATTCATCCAATCAAACTCTTCTAGTTGGTACATATGGTTATGTTGCCCCAGAACTTGCATACACAATGGTGGTGACTGAAAAATGTGATGTTTATAGTTTTGGTGTGGTAACATTAGAAACAATCATGGGAAGACATCCAGGAGAGTTGATCTCTTCTTTGTCAAAGACTAATTCTACTCAAAGCATAATTCTTATAGATGTCTTAGACTCACGTCTCCCACTTCCTTTGATGAAAGATGCTCAAGATGTTGTTCTTTTGGTCACAATAGCACTATCATGCTTGAGTTCCACACCAAAATCTCGACCATCAATGCAGCAAGTGGCACAACAACTTTCAGTTTCCAAACAACCTTTTCATGTTTGTTTTGAAGAAATTTCACTACAGCAATTGATGAATCGAGATATCTTTGTTGTAGGAAGAAATTAG 2073 0.3724 MGLEGSIPTQIEKLPKLTYLSLFNNRLTGEIPYSLANLTRLESFDISINSIRGVVPTHIGAIRKLTLSNNILTGELPNTLANLTQLETFDISNNNISGEVPCWLRNLNKLRLLGLSGNHLTGSIPSCLCFMTYLTDLHLSSNEFISEMPSSIGNLTNLEVFDASYNRISGTIPYEIGQLRSLQVLDLSHNMLNATIPYQIGNLKMLATLKLSFNNISSSIPPEIGQLPYLQTLDISQNKLSGEIPSSLGKLPIHIHLDLSYNNLIGNIPKVLGMLKDINVSHNSLSGYVPREVYCSFPHSILQGNKKLLGLQKGLSCSYHSTSPAKKAKRYLRIILPLTIFLGFLFIGALIFTRYLHKKKKPKRIVQRNGDIFSVWNYDGKIAFEDIIRVTEDFDIKYCIGTGAYGSVYKASLPSGRIVALKKLHRTEAQDPSFSKSFHNEVKMLTEIRHRNIVELHGFCLHNRCMFLIYEYMERGSLSYVLSKDVEAEELNWNKRVNAIKGIANALSYMHDCKPSIIHRDITSSNILLNSSMEAFVSDFGTARILDPDSSNQTLLVGTYGYVAPELAYTMVVTEKCDVYSFGVVTLETIMGRHPGELISSLSKTNSTQSIILIDVLDSRLPLPLMKDAQDVVLLVTIALSCLSSTPKSRPSMQQVAQQLSVSKQPFHVCFEEISLQQLMNRDIFVVGRN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1709 690 Gene3D Transferase(Phosphotransferase) domain 1 473 674 - -
Sto1g1709 690 SUPERFAMILY Protein kinase-like (PK-like) 380 661 IPR011009 -
Sto1g1709 690 SUPERFAMILY RNI-like 3 309 - -
Sto1g1709 690 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Sto1g1709 690 Pfam Leucine rich repeat 63 120 IPR001611 GO:0005515
Sto1g1709 690 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Sto1g1709 690 Pfam Protein kinase domain 398 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto1g1709 690 ProSiteProfiles Protein kinase domain profile. 394 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto1g1709 690 Gene3D Phosphorylase Kinase; domain 1 356 472 - -
Sto1g1709 690 ProSitePatterns Tyrosine protein kinases specific active-site signature. 517 529 IPR008266 GO:0004672|GO:0006468
Sto1g1709 690 Gene3D Ribonuclease Inhibitor 62 319 IPR032675 -
Sto1g1709 690 SMART LRR_typ_2 83 106 IPR003591 -
Sto1g1709 690 SMART LRR_typ_2 107 131 IPR003591 -
Sto1g1709 690 SMART LRR_typ_2 179 202 IPR003591 -
Sto1g1709 690 SMART LRR_typ_2 14 37 IPR003591 -
Sto1g1709 690 SMART LRR_typ_2 203 227 IPR003591 -
Sto1g1709 690 Gene3D Ribonuclease Inhibitor 1 61 IPR032675 -
Sto1g1709 690 PRINTS Leucine-rich repeat signature 182 195 - -
Sto1g1709 690 PRINTS Leucine-rich repeat signature 227 240 - -
Sto1g1709 690 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 679 - -
Sto1g1709 690 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 3 679 - -
Sto1g1709 690 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1709 Sto-Chr1 25145616 25148091 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1709 3 565 Receptor kinase-like Gene Family AT4G08850 38.560 8.44e-121 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sto1g1709 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1709 - - gmx:100789677 681.404