Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1704 ATGGGGCGTATGCACAGTCGCGGTAAGGGTATTTCTGCTTCGGCTCTTCCGTATAAGAGAACTCCGCCAAGCTGGTTGAAGATCTCCTCGCAGGATGTTGAGGAGAACATCTGCAAATTTGCCAAGAAGGGTCTAACACCATCTCAAATTGGTGTTATTCTCCGTGATTCCCATGGGATTGCACAGGTGAAAAGTGTGACTGGGAACAAGATTCTTCGGATACTGAAGGCCCATGGTCTTGCTCCTGAAATACCAGAAGACTTGTACCATCTAATTAAGAAAGCTGTTTCTATTAGAAAGCACTTGGAGAGGAACAGAAAGGATAAAGATTCTAAATTTAGGTTGATCTTGGTTGAGAGTAGGATCCACCGCCTTGCCCGTTACTACAAGAAGACAAAGAAGCTTCCACCAGTATGGAAATATGAATCTACAACTGCTAGCACCCTTGTTGCTTAG 456 0.4452 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1704 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto1g1704 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto1g1704 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Sto1g1704 151 Gene3D - 35 82 - -
Sto1g1704 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Sto1g1704 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto1g1704 151 PANTHER 40S RIBOSOMAL PROTEIN S13 1 151 - -
Sto1g1704 151 Gene3D - 83 151 - -
Sto1g1704 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
Sto1g1704 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto1g1704 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto1g1704 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1704 Sto-Chr1 25115952 25118427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1704 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 1.97e-103 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1704 K02953 - cpap:110823557 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1704 1 25115952 25118427 Sto1g1704 1 25115952 25118427 ECH
Sto6g0981 6 9702267 9704635 Sto1g1704 1 25115952 25118427 ECH