Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1679 ATGTCCACGACACAAGATGATTATCCACCTATAAATCGTGGAGAACAAGAGTGGTACTTTTTCTCTCCAAGGGAGAAATTATATGCAAAAGGAAATGTGACAAAACGAACAGTACCAGGTGGATATTGGAATGCTAGTGGAAAAGAGTGTTCATCAGTTTTGTTTGAAGGAAATGAGATTGGAAAATGGAGAACAATGATTTTTCATGAAGGAAAACGTGGAGATGATGATTATCCCCCTATAAATCGTGGAGAACATGAGTGGTACTTTTTCTCTCCAAGGGAGAAATTATATGCAAAAGGAAATGTAACGAAACGAACAGTACCAGGTGGATATTGGAATGCTAGTGGAAAAGAGTGTTCATCAGTTTTGTTTGAAGGAAATGAGATTGGAAAATGGAGAACAATGATTTTTCATGAAGGAAAACGTGGAGATGGTAATAATAAGCCCACCCCATGGCTAATGCGTGAATATAGATTGGTTGGGTCTTCTCATTGTAATATGaagTTAGATGATTGGGTTTTATATAAGATTTATGTGAATCCTAAGAACTACAGGAGTAGAGGTGGTGGCAGTAGAGGTTTTGGCACTGGCGGCACAGACGGCCGTGTTTTTGGGGGGGAGTCAACCACCGCCGCTGAAGCTACCACCACCACTGCATTTGGAAGTTGTGGTATTCGCGGCACAGACGACCGTGTTTGTGGGGGGCAGTCAACTACTGTCGCTGCAGCAACCACCACCACTGCAACTGTTAGATAA 759 0.4203 MSTTQDDYPPINRGEQEWYFFSPREKLYAKGNVTKRTVPGGYWNASGKECSSVLFEGNEIGKWRTMIFHEGKRGDDDYPPINRGEHEWYFFSPREKLYAKGNVTKRTVPGGYWNASGKECSSVLFEGNEIGKWRTMIFHEGKRGDGNNKPTPWLMREYRLVGSSHCNMKLDDWVLYKIYVNPKNYRSRGGGSRGFGTGGTDGRVFGGESTTAAEATTTTAFGSCGIRGTDDRVCGGQSTTVAAATTTTATVR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1679 252 SUPERFAMILY NAC domain 13 75 IPR036093 GO:0003677|GO:0006355
Sto1g1679 252 PANTHER NAC TRANSCRIPTION FACTOR 56 78 193 - -
Sto1g1679 252 PANTHER NAC TRANSCRIPTION FACTOR 56 8 73 - -
Sto1g1679 252 Gene3D NAC domain 3 76 IPR036093 GO:0003677|GO:0006355
Sto1g1679 252 Gene3D NAC domain 77 185 IPR036093 GO:0003677|GO:0006355
Sto1g1679 252 ProSiteProfiles NAC domain profile. 37 181 IPR003441 GO:0003677|GO:0006355
Sto1g1679 252 Pfam No apical meristem (NAM) protein 83 160 IPR003441 GO:0003677|GO:0006355
Sto1g1679 252 Pfam No apical meristem (NAM) protein 13 75 IPR003441 GO:0003677|GO:0006355
Sto1g1679 252 SUPERFAMILY NAC domain 83 180 IPR036093 GO:0003677|GO:0006355
Sto1g1679 252 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 8 73 - -
Sto1g1679 252 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 78 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1679 Sto-Chr1 24871596 24884358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1679 14 72 NAC Transcription Factor Family AT4G27410 38.983 3.38e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto1g1679 NAM 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1679 - - nnu:104612551 88.9669