Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1604 ATGGTGAGAGGAAAGACAGAAATGAAACGTATAGAGAATCCAACAAGTAGGCAAGTGACATTCTCAAAGAGGCGAAATGGACTCTTAAAGAAGGCTTTTGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATTGTCTTCTCTCCCACCGGAAAACTCTATGAATTTTCAAGCTCcagTGTGAAGGAGACAATTGAACGCTACCGCAGTTATAACGTAGATGTTGAAACAGCCAGAAGATTCATTGAAGATAATATGCagCATCTGAAGCAAGAAACAGCAAGTATGAAGAACAAGATTGAGCTACTTGAAGTTTCAAAGCGGAAACTCTTGGGACAAGGTTTGGGGTCACACTCCTTAGAAGAACTAGAAGAGATCGAACAACAGTTGCAAAAGAGTGTAAGAAAAGTTCGAGCAAGAAAGAATCAGATCTTTAAGGAGCAAATAGAGCAGCTAAAAGAAAAGGAAAAGGCCCTTGTTGCAGAAAATGAAAGACTCTCTAAGAAGAATGGCATTATTATTGAGGCAAAGGAAGCAATAGAAAATGGGAGTACTGAAAATGGAACCTCCATAGAAAGTAGTCCAACTTCAGATGTGGAGACAAACTTGCTCATTGGACTTTCCAGAAATTAA 636 0.3962 MVRGKTEMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPTGKLYEFSSSSVKETIERYRSYNVDVETARRFIEDNMQHLKQETASMKNKIELLEVSKRKLLGQGLGSHSLEELEEIEQQLQKSVRKVRARKNQIFKEQIEQLKEKEKALVAENERLSKKNGIIIEAKEAIENGSTENGTSIESSPTSDVETNLLIGLSRN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1604 211 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Sto1g1604 211 Coils Coil 121 170 - -
Sto1g1604 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Sto1g1604 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto1g1604 211 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Sto1g1604 211 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Sto1g1604 211 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto1g1604 211 Coils Coil 73 107 - -
Sto1g1604 211 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto1g1604 211 PANTHER MADS BOX PROTEIN 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1604 Sto-Chr1 23879821 23884634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1604 1 158 MADS-box Gene Family AT2G45660 70.253 6.69e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto1g1604 K-box 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1604 - - gmx:100037477 239.195