Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1581 ATGCAACTATGGGAGTATCTATGGTACAAGAGCACTAATTCGACTGTACATGAACCATGGTTGACACTTGACACTGAACCTAAAAGCCCTAAACAAACCAAATCCAACTATGGAGAAGAGGAACACAACTCACCTCCGAGAATAGGAAACAAAGCAGAGAGAACAGAGCAGAGGTGGAGGAGTGGCGAGGAGGAAGATAAGCAAAGCAGAGTACCACCGAGTAACTGTAGCGATGGCGGTGGTTGTCGGAAGCTAAGGGATGAAGCCGCTGCCGCTGCCGCGAAGGAAGAGAGTGACGAAGAGACGACTGATGAGAGTGACCAGGAGATAGGAGCTGAAGCGACAAAATACGCTTCCGCCGCTAATAccagcaacaacaacaacaaaatcaagccGCAAACTCAACAACCAACCAAACCCACCACCGCAATCAAACGCTTCATAGGAGTGAGGCAGAGGCCGTCGGGGAGATGGGTGGCCGAGATCAAGGACTCCTCCCAGCACGTGCGCCTCTGGCTCGGGACCTACGACACGCCGGAGGAGGCGGCCCGGGCCTACGACGAGGCCGCCCGGGCCCTGCGCGGCGACAACGCCCGGACCAACTTCGCGCCGTCCTCGGGCGGCGGTCAATCCGGAGATTCTGGTGACGGCGCCGCGGCGGCGAAACACGGCCTGAGCGGCGGCTTCGCGTCGCTGAAGGCGAAGCTGAGCAAGAATCTGCAGGGCTTGATAGCGAGAGCGAGCGAGACCGCCACAACGACGTCGTCCGCTCACAAGAGTAGGGTGAGCGATCATTTCACGTTCGCTAGTATATTTCAACGCAGGAGGAGTTACCCGCAGTACCAAACCCCTCCGGTggatacaattaataataataataataataataataataataataataatattgtgcAGCCTAGTGTTATTGTGCCTCCTACTACTCATGAACCACCTGAGGCCTTCTGTGGTTCTTGGGAAAGTTCTAGAGCCTCTAGTGTTTCCGACTGCAGCTACGTGGACTGGGCCGTGTTCCGGCAGCCCGCCGGGCCAGCCGGGATCGTGGAGTCGGGGGGATCGTCATCGGACGGTGGGGAGTTTAGCTTGGAGCAATTGATGGGGTGGGTGGAGAGCCCTGATCAGGAAGAGGGGGTTTGGAGGAGTAAGAGGTTTAAGGTGTCTTCATCTGTGCTTGTGCCTCCAACTTTCAGTGGGTCATCTCCATATAGTAGTGCTTGTGGGTCTccatataataataatgggtATGAATATGATTCTCCATATAATTACAGgatttag 1296 0.5154 MQLWEYLWYKSTNSTVHEPWLTLDTEPKSPKQTKSNYGEEEHNSPPRIGNKAERTEQRWRSGEEEDKQSRVPPSNCSDGGGCRKLRDEAAAAAAKEESDEETTDESDQEIGAEATKYASAANTSNNNNKIKPQTQQPTKPTTAIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGDNARTNFAPSSGGGQSGDSGDGAAAAKHGLSGGFASLKAKLSKNLQGLIARASETATTTSSAHKSRVSDHFTFASIFQRRRSYPQYQTPPVDTINNNNNNNNNNNNNIVQPSVIVPPTTHEPPEAFCGSWESSRASSVSDCSYVDWAVFRQPAGPAGIVESGGSSSDGGEFSLEQLMGWVESPDQEEGVWRSKRFKVSSSVLVPPTFSGSSPYSSACGSPYNNNGYEYDSPYNYRI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1581 431 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677
Sto1g1581 431 SMART rav1_2 146 209 IPR001471 GO:0003700|GO:0006355
Sto1g1581 431 Pfam AP2 domain 146 195 IPR001471 GO:0003700|GO:0006355
Sto1g1581 431 CDD AP2 145 203 IPR001471 GO:0003700|GO:0006355
Sto1g1581 431 Gene3D AP2/ERF domain 145 204 IPR036955 GO:0003700|GO:0006355
Sto1g1581 431 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 111 390 - -
Sto1g1581 431 MobiDBLite consensus disorder prediction 117 142 - -
Sto1g1581 431 MobiDBLite consensus disorder prediction 197 219 - -
Sto1g1581 431 MobiDBLite consensus disorder prediction 20 143 - -
Sto1g1581 431 MobiDBLite consensus disorder prediction 81 97 - -
Sto1g1581 431 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700|GO:0006355
Sto1g1581 431 MobiDBLite consensus disorder prediction 33 71 - -
Sto1g1581 431 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 111 390 - -
Sto1g1581 431 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Sto1g1581 431 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1581 Sto-Chr1 23627026 23631027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1581 146 203 AP2-EREBP Transcription Factor Family AT5G19790 74.138 5.60e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g1581 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1581 K09286 - gmx:100799444 250.366