Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1566 ATGAGTTTTGGGGGCTTTCTAGACAACAACTGGGGCAGTGGCGgaggaggtggtggtggtggtaacGGCGGCGGAGGGGCGAGAATCGTCGGCGATATTTACAGCAACGGTGGCGGCGGCGACAATAGAATGCTGTCGAGTGGTACGATACAGCCGCGTCTCGTGACGTCGCCCGCTACGATGGCGAAATCCATGTTCAACAACTCCCCTGGGCTGTCTCTCGCACTACAAACAAATCTTGACGAACAAGGAGGCGGAGGTGGAGGAGATGGGAACAATAGATTAATGGCTGAGATTAATTACGAGCCCAATAGTATTAGTAATGTTGGTGGGAGAAGGAGCAGGGAAGAAGAGCACGAAAGCAGATCTGGCAGCGATAATATGGACGGCGGCGCTTCCGGCGACGATCAGGACGCCGCCGACAACCACCCTCCGAGGAAGAAGCGGTATCACCGACACACCCCTCAGCAAATACAAGAGCTCGAAGCTCTCTTCAAGGAGTGTCCACACCCGGATGAGAAGCAAAGGCTAGAACTCAGCAGGAGACTGTGCTTGGAAACCAGACAAGTGAAATTCTGGTTTCAAAATCGAAGGACTCAGATGAAAACACAATTGGAGCGCCATGAGAACACATTGCTGAGGCAAGAGAACGACAAGCTTAGAGCGGAGAACATGTCCATACGAGACGCCATGAGGAACCCCATATGCTCCAACTGCGGCGGCCCGGCCATCATCGGCGACATTTCGCTCGAAGAGCAGCATCTCCGGATCGAAAACGCCCGGTTGAAGGACGAGCTGGACCGGGTTTGTGCTCTCGCGGGCAAGTTCCTGGGCCGGCCCATTTCCTCGCTCACCGGCCCGATGGGCCCGCCATTGCCGAACTCCAGCCTGGAGCTCGGCgttggcggcggcggcggtttCGGCACGACCACGCCGCTCCCTTTGGGGCCGGATTTCGGGATCGCGATTTCGAGCCCCTTAGCCATGGTGTCTCCTACGGCCGCGGCGACCACGGCGGCGATGACCAGACCATCGGCGGGTGGTGGGCCCGTGGTGGGTGGGCTAGACAGGTCCATCGAGAGGTCCATGTTTCTGGAGCTTGCTTTGGCTGCCATGGAAGAGTTGGTGAAGATGGTGCACACGGACGAGCCTCTTTGGGTGAGGAGTTTAGAGGAaataggaggaggaggaagagagaTTTTGAACCATGATGAGTACATGAGAACGTTCAGTACTCCTTGCATTGGATTGAGACCCAATGGGTTCGTTTCCGAGTCCTCTAGAGAGACCGGAATGGTCATCATAAACAGCTTAGCTCTCGTGGAGACTCTAATGGATTCCAATCGATGGGCAGAAATGTTTCCTTGTTTGATTGCGAGAACCGCCACCACCGAGGTGGTGTCCAGTGGAATAAACGGAACGAGAAATGGAGCACTCCAACTCATGCATGCTGAGCTACAAGTACTGTCTCCTTTGGTTCCGGTTCGGGAAGTGAATTTCCTTCGGTTTTGCAAGCAGCACGCAGAGGGAGTGTGGGCTGTGGTAGATGTGTCCATAGACAGCATCCGAGAAACTTCTTCTGGAGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGCTGTGTGGTTCAAGATATGCCTAATGGTTACTCCAAGGTGACTTGGGTGGAGCATGCAGAATATGACGATAGCCAAGTCCACCAGCTGTACAGACCCTTATTGAGCTCAGGCATGGGCTTCGGTGCGCAACGCTGGGTCGCCACCCTTCAACGCCAATGCGAGTGCCTAGCCATCTTAATGTCCTCCTCCGTACCTTCTCGAGACCACTCTGCCATCACGGCGGGTGGGCGTCGAAGCATGCTGAAGCTAGCACAGCGTATGACCAACAACTTCTGTGCCGGAGTCTGCGCCTCCACGGTGCACAAATGGAACAAGCTCAACGCCGGCAATGTCGACGAGGACGTGAGGGTGATGACACGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATCGTGTTGAGCGCGGCGACGTCGGTTTGGCTTCCGGTTTCGCCTCAGAGGCTGTTTGATTTCCTCCGGGACGAGCGACTCCGCAGCGAATGGGACATACTATCAAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAATTGCGTTTCCCTCCTAAGAGCCAGCgctATGAATGCAAACCAGAGTAGCATGCTGATACTGCAGGAGACGTGCATAGACGCGGCGGGTTCGCTTGTGGTGTACGCGCCGGTCGACATCCCGGCGATGCACGTCGTGATGAACGGCGGCGATTCGGCTTACGTGGCGCTGCTGCCGTCGGGTTTCGCGATCGTTCCGGACGGGCCGTCGCGCGGGTCCCAATCCACGGCGGCGAACGGCGGAGGCGGTCATCAGAAAGTGAGTGGGTCCCTCCTGACGGTGGCGTTTCAGATCCTCGTGAACAGCCTCCCCACGGCCAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTCCAGAAAATAAAGGCCGCGCTTCACTGCGAAAGCTGA 2583 0.5532 MSFGGFLDNNWGSGGGGGGGGNGGGGARIVGDIYSNGGGGDNRMLSSGTIQPRLVTSPATMAKSMFNNSPGLSLALQTNLDEQGGGGGGDGNNRLMAEINYEPNSISNVGGRRSREEEHESRSGSDNMDGGASGDDQDAADNHPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTGPMGPPLPNSSLELGVGGGGGFGTTTPLPLGPDFGIAISSPLAMVSPTAAATTAAMTRPSAGGGPVVGGLDRSIERSMFLELALAAMEELVKMVHTDEPLWVRSLEEIGGGGREILNHDEYMRTFSTPCIGLRPNGFVSESSRETGMVIINSLALVETLMDSNRWAEMFPCLIARTATTEVVSSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRETSSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSSVPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPSRGSQSTAANGGGGHQKVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1566 860 SUPERFAMILY Bet v1-like 624 853 - -
Sto1g1566 860 Gene3D - 133 220 - -
Sto1g1566 860 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 102 857 IPR042160 -
Sto1g1566 860 ProSiteProfiles START domain profile. 357 599 IPR002913 GO:0008289
Sto1g1566 860 MobiDBLite consensus disorder prediction 102 154 - -
Sto1g1566 860 CDD homeodomain 146 204 IPR001356 GO:0003677
Sto1g1566 860 Pfam Homeodomain 147 202 IPR001356 GO:0003677
Sto1g1566 860 Coils Coil 198 230 - -
Sto1g1566 860 Gene3D - 436 593 IPR023393 -
Sto1g1566 860 SUPERFAMILY Bet v1-like 359 596 - -
Sto1g1566 860 MobiDBLite consensus disorder prediction 111 125 - -
Sto1g1566 860 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Sto1g1566 860 Pfam START domain 366 596 IPR002913 GO:0008289
Sto1g1566 860 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 102 857 - -
Sto1g1566 860 CDD START_ArGLABRA2_like 361 595 - -
Sto1g1566 860 SUPERFAMILY Homeodomain-like 127 204 IPR009057 -
Sto1g1566 860 SMART HOX_1 145 208 IPR001356 GO:0003677
Sto1g1566 860 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Sto1g1566 860 SMART START_1 366 596 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1566 Sto-Chr1 23308945 23314373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1566 1 860 Homeobox Transcription Factor Family AT3G61150 63.481 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto1g1566 START 4.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1566 K09338 - jre:108985886 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1566 1 23308945 23314373 Sto1g1566 1 23308945 23314373 ECH