Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1548 ATGCAGAGAGGACTAGCTGGTTCTGGAGCACAGCCTGAGTTACATGCTTCACTAGGACTAGTTGGTTCTGGAGCACAGCCTGAGTTGCATGCTTCACCTGGTATTTGTCTCCTACCGAATCCCAATCTACCATTTCAACCAGGCATTGGAGGTGCTTCCATTAGATCCACATTACCATTAGAATCTTCTGCAATTTCACCTCATGGAGTTAACATGGGTGCTCCTCCTGAGGAACATATCAAAAGGAGGAGAGGAAGGCCTAGGAAATATGATCTGGATGGAAGTGTATCATTGGCATTGACTCAATCAACTCATCCTGAAACTTCGAGGCAGAGTGAGAAACGGGGTAGAGGGCGTCCACGAGGGTCTGGGAAAAAGCATCAATCGGCCTCTCTTGGTGAAGTGGTGTCTGGTTCGGCTGGAACGTGTTTCACCCCTCATGTCATCACCGTTGCAACTGGAGAAGACATTGCTTCAAAAATAATGGCATTTTCTCAGCAGGGGCCTAGAGCTGTATGCATTTTGTCAGCAAATGGGATTGTCTCTAATGTGACGCTTCGACTGCCTTCTGTTGGTGGCACTGCCAAACATGAGGGGCATTATGAAATATTGTGCCTGTCTGGTTCTTACGTGCTTACTGAAAGTGGTGGTTCTCGCAATCAAACCGGCGCTCTAAGTGTTTCCCTTGCTAGTTCTGAGGGCCGTGTCATCGGTGGAAGAGTAGGATCGCTTATTGCAGCAAGTCCAGTTCAGTTGATAGTTGGGAGCTTTCtattgaagaagaaggaaggcaCAGAAAAAGAAGCAAATGTTGCGAGGGAATCGGATGATCAAGCAGTTCATAGTCCAGTTGTTTCGCCAAATCAAAATCTTACTCAAGCATCATCATCTATGAGTTCTTGGCGTGATGCTCGTCAATTGGATATGCGTAATGCCCATTTTGACATTGATTTAACCCGTGGGTGa 966 0.4586 MQRGLAGSGAQPELHASLGLVGSGAQPELHASPGICLLPNPNLPFQPGIGGASIRSTLPLESSAISPHGVNMGAPPEEHIKRRRGRPRKYDLDGSVSLALTQSTHPETSRQSEKRGRGRPRGSGKKHQSASLGEVVSGSAGTCFTPHVITVATGEDIASKIMAFSQQGPRAVCILSANGIVSNVTLRLPSVGGTAKHEGHYEILCLSGSYVLTESGGSRNQTGALSVSLASSEGRVIGGRVGSLIAASPVQLIVGSFLLKKKEGTEKEANVARESDDQAVHSPVVSPNQNLTQASSSMSSWRDARQLDMRNAHFDIDLTRG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1548 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 258 - -
Sto1g1548 321 ProSiteProfiles PPC domain profile profile. 141 278 IPR005175 -
Sto1g1548 321 MobiDBLite consensus disorder prediction 63 134 - -
Sto1g1548 321 MobiDBLite consensus disorder prediction 268 302 - -
Sto1g1548 321 Gene3D - 146 278 - -
Sto1g1548 321 MobiDBLite consensus disorder prediction 281 302 - -
Sto1g1548 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 257 IPR005175 -
Sto1g1548 321 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Sto1g1548 321 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Sto1g1548 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 299 IPR039605 GO:0003680
Sto1g1548 321 CDD DUF296 145 257 IPR005175 -
Sto1g1548 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1548 Sto-Chr1 23054218 23059470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1548 4 257 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 53.650 6.33e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1548 - - gmx:100814615 370.548