Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1520 ATGGCCTTGCgattttctccggtgagtggtGAGCCACAGCCCAGTGCTTCTTCTCTTCACTCTGTTAGGCAAGGGATGTTAGGTACTCCGTACCATAAATCCTGCTTCAAATGCAGCCACTGCAAGGGATTTCTCTCGGTAACGTACTCCGAATCTTCTGTTGTTTATGATCGTATGAGCAGCTACTCCTGGATGGATGGTGTGCTCTACTGCAAGCCACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACTTCCAGCAAGCTGTCTTCTATGTTCAGTGGAACTCAAGACAAGTGCTCAGTTTGCTCAAAGACAGTCTATCCACTGGAAAAGATGACTCTGGAAGGGGAGTGCTTCCACAAGTCCTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACCCATTCCTCCTATGCTGCTTTAGATGGTGTCCTCTACTGCAGGCACCACTTTGCCCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAAGCTGCTGCTCACAAGAGGAGTGCCAGTGCCGGCACTCCTCCCCCCGAGCCGGCGAGCGAGGACGAGCATCAGGCCGACGATCCGGCCGAGGAGGAGCCCAAGAAAGCAGAAGCAGCTGATGGAGATGCagatgaagaaggagaagcagacAAGTCTTAG 678 0.4853 MALRFSPVSGEPQPSASSLHSVRQGMLGTPYHKSCFKCSHCKGFLSVTYSESSVVYDRMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQTSSKLSSMFSGTQDKCSVCSKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPEPASEDEHQADDPAEEEPKKAEAADGDADEEGEADKS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1520 225 Pfam LIM domain 106 161 IPR001781 -
Sto1g1520 225 Pfam LIM domain 26 78 IPR001781 -
Sto1g1520 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 89 - -
Sto1g1520 225 ProSiteProfiles LIM domain profile. 6 81 IPR001781 -
Sto1g1520 225 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 28 200 - -
Sto1g1520 225 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Sto1g1520 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Sto1g1520 225 Gene3D Cysteine Rich Protein 15 102 - -
Sto1g1520 225 SMART lim_4 105 157 IPR001781 -
Sto1g1520 225 SMART lim_4 18 74 IPR001781 -
Sto1g1520 225 PANTHER OS06G0237300 PROTEIN 28 200 IPR045268 GO:0051015
Sto1g1520 225 MobiDBLite consensus disorder prediction 201 225 - -
Sto1g1520 225 MobiDBLite consensus disorder prediction 177 225 - -
Sto1g1520 225 Gene3D Cysteine Rich Protein 103 170 - -
Sto1g1520 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1520 Sto-Chr1 22788787 22793172 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto1g1520 LIM 2.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1520 - K09377 bhj:120092088 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1520 1 22788787 22793172 Sto1g1520 1 22788787 22793172 ECH