Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1516 atgggAAGAACACCATGTTGCGACAAGAAGGGTTTGAAGAGAGGGCCATGGACGGCTGAAGAAGATGAGATCCTTCTTCATTATATCAACAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCAAAGTTAAGGTGGACGAACTATTTAAGACCTGATATAAAACGTGGTCCCTTTACTCACGACGAAGAGAAGCTCGTCATACAGCTTCATGCCATCCTAGGAAATAGGTGGGCTGCTATAGCTTCTCAGCTACCCGGAAGAACAGACAATGAGATAAAGAATTTATGGAACACCCACTTGAAGAAGCGACTCTTAAGCATGGGACTTGACCCCCAAACCCACAAGCCACCACTAGTGTCGCCCAAACCAGAGGCGACACCGGCATCAGTTTCCAGTACTCGTCACATGGCCCAGTGGGAGAGCGCCCGGCTCGAAGCCGAGGCCCGGCTCTCCAGAGAGTCCTCCCTCTTCGAAAACAACCCACCCATCCCCACTAGTCTCGCCAGACCAAGCGGCGACTCCGACTTCTTCCTCCGCCTGTGGAACTCCGAAGTCGGCGACGCCTTTCGGAACCTGATGCTGCGCAATAAGAAACTATCCGATACTGATAATGTCGCCTCCGCTTGTGACGACTTCCCCGTTTCTTCCCCCGGAGTGTCGTCCTCGTCCACCAAGAGCAGTGTTGTCTCGATCTCTGCCGCAGTCAAGACCGAAGCTCCGCCGCCGATCGTTGTTGGCGAATGCGAAACGGAAGTCGCCGGTGGATCTGACGACTCTTCGATCTCTCATGATGATGATTTGGAAGACTCGTCAGACACTGCCTTGCAGCTCTTGTTGGATTTTCCTACTTGTGATGACATGAGTTTCTTGGAAGGGAACTCTCTTATTTGCCCTATTTACAATAAGGCCTTGAGGCACAGCCTCGACCAGCAAGACCTTGTTTAA 948 0.5158 MGRTPCCDKKGLKRGPWTAEEDEILLHYINKNGGHGSWRSLPKLRWTNYLRPDIKRGPFTHDEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLSMGLDPQTHKPPLVSPKPEATPASVSSTRHMAQWESARLEAEARLSRESSLFENNPPIPTSLARPSGDSDFFLRLWNSEVGDAFRNLMLRNKKLSDTDNVASACDDFPVSSPGVSSSSTKSSVVSISAAVKTEAPPPIVVGECETEVAGGSDDSSISHDDDLEDSSDTALQLLLDFPTCDDMSFLEGNSLICPIYNKALRHSLDQQDLV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1516 315 PANTHER PROTEIN ODORANT1-LIKE 1 297 - -
Sto1g1516 315 Gene3D - 11 56 - -
Sto1g1516 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 40 IPR017930 -
Sto1g1516 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 297 - -
Sto1g1516 315 ProSiteProfiles Myb-like domain profile. 9 43 IPR001005 -
Sto1g1516 315 Gene3D - 58 105 - -
Sto1g1516 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Sto1g1516 315 CDD SANT 58 101 IPR001005 -
Sto1g1516 315 SUPERFAMILY Homeodomain-like 11 97 IPR009057 -
Sto1g1516 315 SMART sant 13 52 IPR001005 -
Sto1g1516 315 SMART sant 55 103 IPR001005 -
Sto1g1516 315 Pfam Myb-like DNA-binding domain 56 101 IPR001005 -
Sto1g1516 315 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1516 Sto-Chr1 22729783 22733640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1516 1 294 MYB Transcription Factor Family AT3G61250 57.003 5.64e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto1g1516 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1516 K09422 - gmx:100816569 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1516 1 22729783 22733640 Sto1g1516 1 22729783 22733640 ECH