Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1512 ATGGAAGCTTTTGGGCGATACCTAGACTTGCATGAATTGTACCATAAATATGTCAATTCCAAATTTGGAGAGCCAGTAGAGTATTCTGCTTACCTTGATATTTTCTCACAAACTGAGAACATCCCACgcaaaatgaaaatgactagGCAGTACAGGGAATATATGGAGAACCTTTTGGAGTATCTGATATACTTTTTCCAGCGGACAGAACCCTTGCAAGATTTTGATCGAATTTTCTCTAAGGTAGAAAGTGAGTTTGAAGAAAATTGGGCTACAAACAAGGTACCTGGATGGGAGCATGACACTCAAGAGAATGGACATGTTCCTGCTCAGCACACTGCAATTGATCTTGATTATTACAGTACAGTAGAAGAGCTGATGGAAGTGGGTCCAGAAAAGTTAAAAGAGGCACTGTCTGCATTGGGGCTTAAGACTGGGGGTACTGTTCAGCAACGTGCAGAGAGGCTGTTCCTCACAAAGCACACACCACTTGAAAAGTTGGACAGAAAGCATTTTGCTAAGGGACCACGAGGTTCTGAGAAAAATGTAACCACTGCTGTTCCACAACAAGatgaaaattcaaaagaaattgCACTAATGGAGGCCAAAATGAAAAAACTATGTGATCTGTTAGAAGAGACAATTGCAcgaacaaaagacaatgttgtGAAGAAGCAAGCCTTGACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGAGGAAAGTGAAAGTGAAGATGAGGAGCAACAGATATATAATCCCCTAAAGTTGCCCATGGGATGGGATGGGAAACCTATACCCTATTGGCTTTACAAGCTACATGGTCTGGGCCAGGAATTCAAGTGCGAAATATGTGGGAACTACAGTTATTGGGGCCGTAGAGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGTTGCCTTGGTATACCAAATACtaagaacttcaatgaaatcaCATCAATTGAGTCCAAACTGATTCAAATAATCATTAGGGAAGCAAAGGAACTTTGGAAAAGAATACAAGAAAGGCAGGGAGTGAACAAGTGGCGCCCGGATCTGGAAGAAGAATATGAAGATAAAGAAGGCAACATCTACAATAAGAAGACATATACTGATTTACAGCGCCAGGGACTGATATAA 1167 0.3933 MEAFGRYLDLHELYHKYVNSKFGEPVEYSAYLDIFSQTENIPRKMKMTRQYREYMENLLEYLIYFFQRTEPLQDFDRIFSKVESEFEENWATNKVPGWEHDTQENGHVPAQHTAIDLDYYSTVEELMEVGPEKLKEALSALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGPRGSEKNVTTAVPQQDENSKEIALMEAKMKKLCDLLEETIARTKDNVVKKQALTYEEIEAEREEEETQEESESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIESKLIQIIIREAKELWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1512 388 MobiDBLite consensus disorder prediction 171 191 - -
Sto1g1512 388 Pfam Replication stress response SDE2 C-terminal 94 174 - -
Sto1g1512 388 PANTHER SPLICING FACTOR SF3A-RELATED 2 388 - -
Sto1g1512 388 PANTHER BNAA03G01920D PROTEIN 2 388 - -
Sto1g1512 388 Coils Coil 223 252 - -
Sto1g1512 388 MobiDBLite consensus disorder prediction 233 253 - -
Sto1g1512 388 Pfam SF3a60/Prp9 C-terminal 260 388 IPR024598 GO:0000398|GO:0003723|GO:0005681
Sto1g1512 388 MobiDBLite consensus disorder prediction 233 252 - -
Sto1g1512 388 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 2 46 IPR031774 -
Sto1g1512 388 ProSiteProfiles Zinc finger matrin-type profile. 284 315 IPR000690 GO:0003676|GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1512 Sto-Chr1 22667111 22673045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1512 2 388 C2H2 Transcription Factor Family AT5G06160 75.194 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1512 K12827 - gmx:100815393 670.233