Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1506 ATGCACAGTACCTCAAGTccatcaccttcttcttcttctccgccTAATACCGCCATGGACAGCTCGCCGCTTCTCAGTCACTCCATCTCCGACCACCTCCTCCGGAGTCGTCGCTTCATCCACGGCACTCAGCCGCCGCTCCGGACTGCCGCGCGGTTCTTCCGCCGCGCTAGCGGGCGGCGCATGATGCTCCGGGAGCCGTCGGTGCGGGTCCGTGAGAGCGCGGCGGAGCAGCTGGAGGAGCGACAGAGTGATTGGGCGTACTCGAAGCCGGTGATAATATTGGATATAATGTGGAACTTAGCGCTTGTGGCTATCGGGGTTACGATTTTGGGACTGAGTACGGAGGAAAAGCCATGTGTGCCTTTGAGGATATGGATTGTGGGGTACTTGTTGCAGGGTTTGTTTCACTCTTTGTGTGTGGTTGTGGAATACAGGAGACGTAACTTGGCGGGTTCGACGATGATGGAGGAGCCGAATGATAATGGTGGTTGGGTAAGTGTTGGAGATTCGAATTATAGTTCTGGGAGTGATGGAGAGGATTCTGCTACAGAGCATCTTCTGAGGGATGATGGAAACAGCTTCATGAAGCACATAGAATCTGCAAATACCATGGTTTCATTCCTCTGGTGGATACTTGGATTCTACTGGATAACGGCTGGTGGTCAGAGCTTGACACATGATTCACCTCAGCTTTACTGGCTTTGTATTACATTTCTTGCTTTCGACATTGTAATTGTATTGATCTGTGTTGTTGTTGCTTGTCTTCTTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCTATTATGTATGCGGTAGCAGATCAGGAAGGTGCAACCACAGAAGAGATTGATCAGTTGCCAAAATACAAGTTTCGAAGGATCGAAGGATTGAAAAAAGTTGATGGTGATATCCAAGAACCTTCCAGAGGAATAATGACAGAATGTGAGAGTGATACACCTGCAGAAAACGTTCTTTCCTTGGAAGATGCTGAATGCTGTATCTGCCTCACTGCTTATGATGACGGTGCTGAACTTAGAGAACTTCCTTGTAACCACCATTTCCACTGCACCTGCATAGACAAATGGTTGCACATAAATGCCAACTGCCCTCTCTGCAAGTTCAACATTTTGAGGATGGAAAACCAACGTCAAGAAGTTTGA 1170 0.4726 MHSTSSPSPSSSSPPNTAMDSSPLLSHSISDHLLRSRRFIHGTQPPLRTAARFFRRASGRRMMLREPSVRVRESAAEQLEERQSDWAYSKPVIILDIMWNLALVAIGVTILGLSTEEKPCVPLRIWIVGYLLQGLFHSLCVVVEYRRRNLAGSTMMEEPNDNGGWVSVGDSNYSSGSDGEDSATEHLLRDDGNSFMKHIESANTMVSFLWWILGFYWITAGGQSLTHDSPQLYWLCITFLAFDIVIVLICVVVACLLGIAVCCCLPCILAIMYAVADQEGATTEEIDQLPKYKFRRIEGLKKVDGDIQEPSRGIMTECESDTPAENVLSLEDAECCICLTAYDDGAELRELPCNHHFHCTCIDKWLHINANCPLCKFNILRMENQRQEV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1506 389 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 389 - -
Sto1g1506 389 PANTHER TARGET OF ERK KINASE MPK-1 10 389 - -
Sto1g1506 389 SUPERFAMILY RING/U-box 325 382 - -
Sto1g1506 389 CDD RING-H2_RNF111_like 334 378 - -
Sto1g1506 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 385 IPR013083 -
Sto1g1506 389 MobiDBLite consensus disorder prediction 1 22 - -
Sto1g1506 389 SMART ring_2 335 375 IPR001841 -
Sto1g1506 389 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Sto1g1506 389 Pfam Ring finger domain 334 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1506 Sto-Chr1 22630937 22636572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1506 1 385 C3H Transcription Factor Family AT1G68070 45.385 2.25e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1506 - - qsu:111991620 523.472