Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1074 ATGAAGGAAAGAAAATTCTCTGAACACAAAATTATCACACACAAGCTTGTGAAAACTGGATTTGCTGGAACACCAAGAGTCGTTTGGATTTCCGTCATAGACAACTATGCCACTGATTCTTCcagtgatgaagaagaagaagaagatggaagaTTCTCTCATCGACCAACCAGAGTGAAGAAGCTAATCCACGAGGTCAGAATCAAAGACTTTTCGAGTTTCATTGCTAAAATAGAAGCAAACGGCGATTCCAGAGCGTTGTTGAAGCAAAAGCTCAAACAGAAAAGGGGAAAACCTGCCATCACCAAAACGAAACGGAGCCTTCAGAACGGGAAACAGAGATTTCGCGGCGTTCGGCAGCGGCTGTGGGGGCGGTGGGCGGCGGAGATTCGGGACCCGTTCCGGCGAGCTCGGAAGTGGCTGGGAACGTTCGACACGACGGAGGAAGCCGCTCTGGTATACGACAGAGAAGCCATTCGTCTCAGAGGAGCCGATGCTCTCACGAATTTGATCAAACCGCCTGAGAAATCGCACTATCTGGTACTGCCATTGGATGACAATGCGTCCCAATCCCAAGGGTTTGTGAGAAGTCGTCACGTGAAGAACGAGTGGTCGGAGAATGACGGTGTCTACGATTCGTCTCGCGATTTATTATCGACGTCATATTTTTCCTCGCCGATCTCTGTTCTTACATATGACGGTGGTCCTAGGGTGCATGAACCAGCAGGAGGCGAAGAAGAACGTGCTGTGCCCCAATCAACTTCAAATGACATTTTGAGAGACATCCCCTTTAATGTCGATGATGATTTTGAATCTTCGAATTGGGTTGTTGATAATTACTTTCAAGACCCTTTGCCTCTTCTATGA 867 0.4614 MKERKFSEHKIITHKLVKTGFAGTPRVVWISVIDNYATDSSSDEEEEEDGRFSHRPTRVKKLIHEVRIKDFSSFIAKIEANGDSRALLKQKLKQKRGKPAITKTKRSLQNGKQRFRGVRQRLWGRWAAEIRDPFRRARKWLGTFDTTEEAALVYDREAIRLRGADALTNLIKPPEKSHYLVLPLDDNASQSQGFVRSRHVKNEWSENDGVYDSSRDLLSTSYFSSPISVLTYDGGPRVHEPAGGEEERAVPQSTSNDILRDIPFNVDDDFESSNWVVDNYFQDPLPLL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1074 288 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Sto1g1074 288 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Sto1g1074 288 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Sto1g1074 288 MobiDBLite consensus disorder prediction 236 256 - -
Sto1g1074 288 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Sto1g1074 288 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 235 - -
Sto1g1074 288 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Sto1g1074 288 SUPERFAMILY DNA-binding domain 114 170 IPR016177 GO:0003677
Sto1g1074 288 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Sto1g1074 288 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 235 - -
Sto1g1074 288 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1074 Sto-Chr1 13400462 13401418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1074 5 232 AP2-EREBP Transcription Factor Family AT4G27950 40.000 1.05e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g1074 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1074 - - gmx:100814120 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g1074 1 13400462 13401418 Sto1g1074 1 13400462 13401418 ECH
Sto6g1114 6 10692161 10693186 Sto1g1074 1 13400462 13401418 ECH