Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0982 ATGAATTACaagaatcgaagaaatccaAACCAGAAAGCAGAAATCGTATCAGCTCTCTCTCACTATGCTACTATCGTTGTTCTCTCCGGCGTGTTCTCTCCTTCACGGTGCCAGTTCACTGCTCTCTCTCACAGCAACGGCGTTACTGCTCCTCCTCACGACGTCGTTCTGCTCTCTCAATTTCGACTCAATGGTTTTGCAATGTGTCCTCCACCTCCCTACAATACTCACAATGATGATCTAACCGCCACCACCAGCTCCGCCGTCACAACCACCACAACTGTATACTCCGCCTCCCCTGCCGCCGTTGATACTACGGAGAAATCTGACAACCCCCGTGGAGGTGGCACACGGCACCCTGTCTACCGGGGCGTCCGGAAGCGGCGGTGGGGCAAATGGGTGTCCGAAATCCGGGAGCCACGCAAGAAGTCGCGCATATGGCTCGGGTCCTTTCCGGTGCCGGAGATGGCGGCGAAGGCGTATGACGTGGCGGCCTACTGCTTGAAAGGCCGGAAAGCGCAGCTCAATTTCCCGGACGAGGTCGAGCACTTGCCGCTGCCGTCCACCTGTGCCGCTAGAGACATCCAGGCAGCGGCGGCCAAGGCTGCTCACGCGATGAAAGCCTCCGCGAAGAAGTGTAGTAGTATCATTATATCCGATGACGGCGAAGGCGACGGCGACGGTGATGGAGGAGACAGCGGCGGTGATGATTTTTGGGAAGAAATTGAACTGCCGGAGCTGATGAACAGTGAGTATTGTTGGAATTCTCCAAGTGGGTCGTCATGGGGTTCCTCCGGCGACATCGCGGCGTGGCCGGATATGGAGCTTCCGCCACAGCAGCCACCATTCATGGCGTGTCTATAA 864 0.5579 MNYKNRRNPNQKAEIVSALSHYATIVVLSGVFSPSRCQFTALSHSNGVTAPPHDVVLLSQFRLNGFAMCPPPPYNTHNDDLTATTSSAVTTTTTVYSASPAAVDTTEKSDNPRGGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVEHLPLPSTCAARDIQAAAAKAAHAMKASAKKCSSIIISDDGEGDGDGDGGDSGGDDFWEEIELPELMNSEYCWNSPSGSSWGSSGDIAAWPDMELPPQQPPFMACL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0982 287 MobiDBLite consensus disorder prediction 101 121 - -
Sto1g0982 287 CDD AP2 122 179 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Sto1g0982 287 MobiDBLite consensus disorder prediction 222 238 - -
Sto1g0982 287 MobiDBLite consensus disorder prediction 219 238 - -
Sto1g0982 287 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 101 287 - -
Sto1g0982 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 101 287 - -
Sto1g0982 287 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Sto1g0982 287 Gene3D AP2/ERF domain 121 179 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0982 Sto-Chr1 12182407 12186934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0982 117 287 AP2-EREBP Transcription Factor Family AT1G01250 66.279 1.04e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g0982 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0982 K09286 - gmx:100819971 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0982 1 12182407 12186934 Sto1g0982 1 12182407 12186934 ECH