LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto1g0916	ATGCCTGTATTTCAATTCAGGTTTGAGGATTGCAGCCCCGAATCATCTTTCAGTGTTGAGAAGACAAATTCCACTGATGATGATGGATACCATCAAAGAAAAACTAGAGCACGAGGCAAATCTGTTTTTAAGCATATTAGAAGACAACTCCTGATGAGAAGATCTGAGACGACAAAAAACTTGAGAAAACCCACAAGTAGTAGTACTGTGCACCCACTAAGCGATGCAACGTACAAAAAGCAGCCTCCCAAGAGCAAAATTCTGGATCCACAAGGGTCATTCCTTCAGAAATGGAACAAAATATTTGTGATCACAAGTGTCATAGCAGTTTCTGTGGACCCACTCTTCTTTTATATCCCTATGATTGATTCCAACCATAAATGCATTGATTTGAACAAAATATTGCCGATTACTGCTAGTGTTCTGCGTACTTTCTTTGATCTTTCCTACATCCTCCACATCATGTTTCAGTTTCGAACTGGGTTCATTGCCCCTTCTTCTCGAGTGTTTGGAAGGGGAGATCTCATTGATGATCCTGTGGCTATTGCGAAAAGATACTTATCCACGTATTTCATCATTGACATCCTATCAATTATTCCACTTCCACAGGCGGTTCTTTTAGCAATCATTCCTATAAAAAATCCAGGTTCATGTGTAGTGAAGGATTGGTTAAAGTACATAGTATTCATCCAGTATGTGCCAAGATTTCTTCGGATCTATCCATTATTCAGTGAAGTAACTAGAACTTCTGGAATTTTGACTGAGACAGCATGGGCTGGTGCTGCTTATAATCTCTGTCTCTATATGATAGCTAGTCATGTGGTTGGAGCTTTTTGGTACTTGTTTTCGGTAGAATCAGAGCTTCGGTGTTGGCGCAAAGCATTAAATCATAATGGTACTCTCTGGGAACATGCATACTTGAGCTGTGGACACCAAAAGTCAAATGCCACTGTCATTTCATTTCTCAACAGTTCTTGTCCCCGAGAGGAAGAAATTGTATATCTCCCAGACTTCAAATTTGGAATATTTCTTGATGCTCTAAAATCCCATGTGGTAGAAACGACAGCAACTTTTCCTCAAAAGATTTTCTATTGCTTTTGGTGGGGTCTGCGCAATGTAGGTTCTTTGGGACAAAACCTCCAGACAAGTACATATGTTGGGGAGATAATCTTTGCTGTCCTCATTGTCATCTTTGGGTTGGTTTTGTTCTCATTACTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTTAGAGTTGAAGAAATGAGAGTCAAGAGGAGGGATGCAGAGCACTGGATGTCCCACCGTATGCTACCTGAGCCCTTAAGGGAAAGAATTAGACGGTATGAACATTACAAATGGCAAGAGAATAGGGGTGTGGATGAGGAGACATTAATTCACAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGCCACCTTTGCTTGGATTTAGTTAAAAAAGTGCAGATGTTTGAGAAAATGGATGAGCAGTTGCTGGATGCTTTATGTGACCGATTGAAGCCGGTACTGTATACCGAGAACAGCCACATTGTTCGCGAAGGAGATCCGGTCGAAGAAATGCTCTTCGTTATGCGAGGAAATCTTGTGGCCATGACCACAAATGGTGGGAAAACTGGTTTCTTCAACTCTTTTGTAATCAAGCCTGGTGCCTTTTGTGGTGAGGAGCTTCTAACATGGGCTTTGGACCCTAACTCTTCATCAAATCTTCCCATTTCAACCAGAACAGTGCATACTATATCAGAAGTTGAAGCCTTTGCTCTCATGGCTAATGACTTAAAGTTTGTTGCTTCTCAGTTTCGGCGCCTTCACAACAAACATATCCAGCACACTTTCAAGTACTATTCCATGCAATGGAGGACATGGGCTGCCTGTTTTATACAAAACGCTTGGCGTCACTACTGCAAAAGGAAGATTGAGAAATCACTGCGTGAAGCAGAGGACAGACTACAAGATGCTCTGGCATATGAGCAAGAGTCATCATTATCACTGAGTTTTGGTGCAACCTTACATACATCAAGGTTTGCTGCCAGTGCACTACGAAGCTTGCGAAAAAATGGCGAACGCAGCAACAATAGAAAGCCTCAAAGATTGCTGCCATTGATGCCTCAGAAGCCTACTGAGCTTGATTTCACTACTTAA	2169	0.4149	MPVFQFRFEDCSPESSFSVEKTNSTDDDGYHQRKTRARGKSVFKHIRRQLLMRRSETTKNLRKPTSSSTVHPLSDATYKKQPPKSKILDPQGSFLQKWNKIFVITSVIAVSVDPLFFYIPMIDSNHKCIDLNKILPITASVLRTFFDLSYILHIMFQFRTGFIAPSSRVFGRGDLIDDPVAIAKRYLSTYFIIDILSIIPLPQAVLLAIIPIKNPGSCVVKDWLKYIVFIQYVPRFLRIYPLFSEVTRTSGILTETAWAGAAYNLCLYMIASHVVGAFWYLFSVESELRCWRKALNHNGTLWEHAYLSCGHQKSNATVISFLNSSCPREEEIVYLPDFKFGIFLDALKSHVVETTATFPQKIFYCFWWGLRNVGSLGQNLQTSTYVGEIIFAVLIVIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEHWMSHRMLPEPLRERIRRYEHYKWQENRGVDEETLIHNLPKDLRRDIKRHLCLDLVKKVQMFEKMDEQLLDALCDRLKPVLYTENSHIVREGDPVEEMLFVMRGNLVAMTTNGGKTGFFNSFVIKPGAFCGEELLTWALDPNSSSNLPISTRTVHTISEVEAFALMANDLKFVASQFRRLHNKHIQHTFKYYSMQWRTWAACFIQNAWRHYCKRKIEKSLREAEDRLQDALAYEQESSLSLSFGATLHTSRFAASALRSLRKNGERSNNRKPQRLLPLMPQKPTELDFTT	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto1g0916	722	Gene3D	-	100	417	-	-
	Sto1g0916	722	Gene3D	Helix hairpin bin	420	484	-	-
	Sto1g0916	722	SUPERFAMILY	Voltage-gated potassium channels	89	415	-	-
	Sto1g0916	722	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	5	722	-	-
	Sto1g0916	722	MobiDBLite	consensus disorder prediction	61	75	-	-
	Sto1g0916	722	Coils	Coil	645	665	-	-
	Sto1g0916	722	MobiDBLite	consensus disorder prediction	693	722	-	-
	Sto1g0916	722	Gene3D	Jelly Rolls	491	611	IPR014710	-
	Sto1g0916	722	MobiDBLite	consensus disorder prediction	54	84	-	-
	Sto1g0916	722	SUPERFAMILY	cAMP-binding domain-like	422	618	IPR018490	-
	Sto1g0916	722	SMART	cnmp_10	493	624	IPR000595	-
	Sto1g0916	722	MobiDBLite	consensus disorder prediction	15	34	-	-
	Sto1g0916	722	ProSiteProfiles	cAMP/cGMP binding motif profile.	493	577	IPR000595	-
	Sto1g0916	722	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	5	722	-	-
	Sto1g0916	722	CDD	CAP_ED	493	624	IPR000595	-
	Sto1g0916	722	Pfam	Ion transport protein	98	421	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto1g0916	Sto-Chr1	11217178	11223324	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto1g0916	71	722	Ion Channels	AT5G53130	66.309	0.0	875

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto1g0916	K05391		-	gmx:100797784	957.592