Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0858 ATGATTCTCTACAACccatttttccttttcattgtTACCATTTTCTTCTTGTACATAATTCGTGTGATTCTGTTCAAAACTGGATTGATGCACACTGTAAAGAAAATCTGCAGAAGCATTGAAGATAAATTTTATGTTTACCAGTTCCTCAGAGTCCCAGAGCTCTATGAAGGCGTGCAAGAGAATCCGTTCTACAGGAAGGTCTCTTTGTATTTGCATTCTCTGCCTTCCATTGAAGATTCCGATTTCATCAATTTGATCACCGGGAAGAAGAACAACGATATCGTTCTCTGCCTCGATCCTAAACAGAGCATCGAGGATGATTTTCTGGGATCTAGAATTTTCTGGCTCAACGAAGGAGACGACAAGTCCGACTCCAATCGTTCCAGAACGTTCATTCTCAAGATCAGGAAAGCTGATAAGCGCCGAATTCTACGCCCTTATCTCCAGCACATCCACACCATCGCGGACGAAATCGAGCAGCAAGGAAAACGTGATCTGAAGCTGTTCATGATCGCCGACCCAATCGTCGGTGGAAAAGGACGGTGGAGATCCGTCCCGTTCACGCATCCCTCAACATTCGACACAATCGCCATGGAATCTGATCTCAAGCACAAGGTGAAATCCGATCTCGAATCGTTCCTCAAGGCGAAACAGTATTACAACCGTCTCGGCCGCGTGTGGAAACGGAGCTTCCTCCTGTACGGCCCCTCCGGTACCGGAAAATCCAGCTTCGTCGCCGCCATGGCCAATTTCCTCTGTTACGACGTGTACGATATGGACCTCTCAAAAGTCCCGAGCGACTCGGATCTGAAATCCATGCTGCTTCAAACGACGACGAAATCCATCATCGTCGTCGAAGACCTCGACCGCTTCCTGATCGCGAATCCAACGGCGGTGAGCCTATCGGGGATTCTAAACTTCATGGACGGGATCTTGAACTCGTGCTGCACCGAGGAGACCATCATGGTGTTCACGATGAACAGCAAGGAGCACGTCGACCCGAATCTGCTCAGACCGGGTCGGGTCGACGTCCATATCCGGTTCAGGCTCTGCGATTTCCCGGCATTCAAGACGCTCGCGAGTAGCTATTTGGGAGTGAAGGACCACAAGCTCTTCCCTCAGGTGGAGGAGATGTTTCTGAACGGGGCGAGCCTGAGCGCCGCGGAAATCGGCGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCGATTAAATCGGTGATCTTCGCTTTGCAAACGGACGGTGATGGGAGGGGGTGCGGCGAGAACATCGGACGGCAGTTAGTGGGCAACGCGGTGGAGGGAATAGACGAACCGAATGGAGTGTTGTGCGCTGATGGTTTCCATACGGTTAAGGATTTCCGGAAATTGTACGGTTTTTTTCGATCAAAGAACCACAGAAAATCTCAGCCGTTCGTTCCCAAGAGATGA 1437 0.499 MILYNPFFLFIVTIFFLYIIRVILFKTGLMHTVKKICRSIEDKFYVYQFLRVPELYEGVQENPFYRKVSLYLHSLPSIEDSDFINLITGKKNNDIVLCLDPKQSIEDDFLGSRIFWLNEGDDKSDSNRSRTFILKIRKADKRRILRPYLQHIHTIADEIEQQGKRDLKLFMIADPIVGGKGRWRSVPFTHPSTFDTIAMESDLKHKVKSDLESFLKAKQYYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLCYDVYDMDLSKVPSDSDLKSMLLQTTTKSIIVVEDLDRFLIANPTAVSLSGILNFMDGILNSCCTEETIMVFTMNSKEHVDPNLLRPGRVDVHIRFRLCDFPAFKTLASSYLGVKDHKLFPQVEEMFLNGASLSAAEIGELMIANRNSPSRAIKSVIFALQTDGDGRGCGENIGRQLVGNAVEGIDEPNGVLCADGFHTVKDFRKLYGFFRSKNHRKSQPFVPKR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0858 478 Pfam ATPase family associated with various cellular activities (AAA) 233 350 IPR003959 GO:0005524|GO:0016887
Sto1g0858 478 CDD AAA 229 351 - -
Sto1g0858 478 SMART AAA_5 228 353 IPR003593 -
Sto1g0858 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 410 IPR027417 -
Sto1g0858 478 Pfam Domain associated at C-terminal with AAA 29 116 IPR025753 -
Sto1g0858 478 PANTHER BCS1 AAA-TYPE ATPASE 9 436 - -
Sto1g0858 478 Gene3D - 184 351 IPR027417 -
Sto1g0858 478 PANTHER BNAC04G00800D PROTEIN 9 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0858 Sto-Chr1 9229144 9230580 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0858 1 9229144 9230580 Sto1g0858 1 9229144 9230580 ECH
Sto6g1190 6 11374081 11379210 Sto1g0858 1 9229144 9230580 ECH